miRNA display CGI


Results 61 - 73 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6387 5' -57.2 NC_001847.1 + 116977 0.7 0.596755
Target:  5'- uGGGCCcGCuGGGGCGAGCGUGGc--- -3'
miRNA:   3'- gCUCGGcCG-UUUCGCUCGCACCaguu -5'
6387 5' -57.2 NC_001847.1 + 117430 0.67 0.759436
Target:  5'- cCGAGCCGcuguacguGCAcuGCG-GCGUGGcCGAc -3'
miRNA:   3'- -GCUCGGC--------CGUuuCGCuCGCACCaGUU- -5'
6387 5' -57.2 NC_001847.1 + 120507 0.68 0.720031
Target:  5'- gCGAG-CGGCGc-GCGAGCGccgcGGUCGAa -3'
miRNA:   3'- -GCUCgGCCGUuuCGCUCGCa---CCAGUU- -5'
6387 5' -57.2 NC_001847.1 + 120932 0.72 0.457981
Target:  5'- gGGGCgGGCGc-GCGGGCGUGGUg-- -3'
miRNA:   3'- gCUCGgCCGUuuCGCUCGCACCAguu -5'
6387 5' -57.2 NC_001847.1 + 124236 0.82 0.11586
Target:  5'- uCGGGCCGGCcGAGCGAGCG-GGcCAAa -3'
miRNA:   3'- -GCUCGGCCGuUUCGCUCGCaCCaGUU- -5'
6387 5' -57.2 NC_001847.1 + 125211 0.66 0.796997
Target:  5'- cCGGGCC-GC--GGCGAGCGUGcUCGu -3'
miRNA:   3'- -GCUCGGcCGuuUCGCUCGCACcAGUu -5'
6387 5' -57.2 NC_001847.1 + 125287 0.66 0.8149
Target:  5'- gGAGCCgucgcagguggGGCAAGGCuGGCcGUGGcUCAu -3'
miRNA:   3'- gCUCGG-----------CCGUUUCGcUCG-CACC-AGUu -5'
6387 5' -57.2 NC_001847.1 + 125445 0.67 0.778485
Target:  5'- gCGuGGCUGGCcgGAGGaCGGGCG-GGUCGg -3'
miRNA:   3'- -GC-UCGGCCG--UUUC-GCUCGCaCCAGUu -5'
6387 5' -57.2 NC_001847.1 + 125518 0.74 0.370117
Target:  5'- gCGGGCCGGCGcggcGGCGGGCGcagcuacGGUCGu -3'
miRNA:   3'- -GCUCGGCCGUu---UCGCUCGCa------CCAGUu -5'
6387 5' -57.2 NC_001847.1 + 125798 0.76 0.280228
Target:  5'- gCGAGUCGGCGGgccGGCGGGCGUgcagcucaaagcgGGUCGGg -3'
miRNA:   3'- -GCUCGGCCGUU---UCGCUCGCA-------------CCAGUU- -5'
6387 5' -57.2 NC_001847.1 + 126202 0.67 0.749734
Target:  5'- gGGGCUGGguGGGCGgagcucacuuGGCGgGGUCGu -3'
miRNA:   3'- gCUCGGCCguUUCGC----------UCGCaCCAGUu -5'
6387 5' -57.2 NC_001847.1 + 134171 0.69 0.627761
Target:  5'- gCGGGCCGGCGcauagacgcccGGCGcAGCGUGGa--- -3'
miRNA:   3'- -GCUCGGCCGUu----------UCGC-UCGCACCaguu -5'
6387 5' -57.2 NC_001847.1 + 134646 0.68 0.679392
Target:  5'- gCGGGCCGGCAgcAGGCGcggaGGCGcGGgCAc -3'
miRNA:   3'- -GCUCGGCCGU--UUCGC----UCGCaCCaGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.