miRNA display CGI


Results 21 - 40 of 73 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6387 5' -57.2 NC_001847.1 + 99747 1.06 0.00253
Target:  5'- cCGAGCCGGCAAAGCGAGCGUGGUCAAa -3'
miRNA:   3'- -GCUCGGCCGUUUCGCUCGCACCAGUU- -5'
6387 5' -57.2 NC_001847.1 + 95935 0.69 0.66808
Target:  5'- uGAGcCCGGCGccggaacgcuggcGGGCGAGCGUGaGcgCAGc -3'
miRNA:   3'- gCUC-GGCCGU-------------UUCGCUCGCAC-Ca-GUU- -5'
6387 5' -57.2 NC_001847.1 + 95657 0.7 0.576204
Target:  5'- gGAGCCuGCGcGGCGGGC-UGGUCu- -3'
miRNA:   3'- gCUCGGcCGUuUCGCUCGcACCAGuu -5'
6387 5' -57.2 NC_001847.1 + 93762 0.68 0.720031
Target:  5'- gGAG-CGGCuGAGCGAGCGUGa---- -3'
miRNA:   3'- gCUCgGCCGuUUCGCUCGCACcaguu -5'
6387 5' -57.2 NC_001847.1 + 87939 0.67 0.759436
Target:  5'- -cGGCCGcGCAcgcGGUGAGCGUGuUCAAa -3'
miRNA:   3'- gcUCGGC-CGUu--UCGCUCGCACcAGUU- -5'
6387 5' -57.2 NC_001847.1 + 87843 0.68 0.720031
Target:  5'- --cGCCGGCGGGcgugauggcccGCGGGCcuGUGGUCGc -3'
miRNA:   3'- gcuCGGCCGUUU-----------CGCUCG--CACCAGUu -5'
6387 5' -57.2 NC_001847.1 + 82305 0.67 0.759436
Target:  5'- cCGGGgCGGgAGAauGCGGGCGgGGUCGc -3'
miRNA:   3'- -GCUCgGCCgUUU--CGCUCGCaCCAGUu -5'
6387 5' -57.2 NC_001847.1 + 81592 0.7 0.564967
Target:  5'- gCGAGCgCGGCGucgguugAGGCGAGCaaGUGGgCAAa -3'
miRNA:   3'- -GCUCG-GCCGU-------UUCGCUCG--CACCaGUU- -5'
6387 5' -57.2 NC_001847.1 + 78872 0.66 0.787813
Target:  5'- -cAGCUGGCGccGGGCGuGUgGUGGUCGu -3'
miRNA:   3'- gcUCGGCCGU--UUCGCuCG-CACCAGUu -5'
6387 5' -57.2 NC_001847.1 + 75650 0.71 0.549739
Target:  5'- gGAGCCGGaggcGCGGGCGUugcucgugaaggccgGGUCGAu -3'
miRNA:   3'- gCUCGGCCguuuCGCUCGCA---------------CCAGUU- -5'
6387 5' -57.2 NC_001847.1 + 75491 0.67 0.759436
Target:  5'- aCGGGCgGGC---GCGAGCG-GGcUCAAa -3'
miRNA:   3'- -GCUCGgCCGuuuCGCUCGCaCC-AGUU- -5'
6387 5' -57.2 NC_001847.1 + 73532 0.68 0.686567
Target:  5'- uGAGCCGGCuGAuugcggaggugggcGCGGGCGU-GUCGc -3'
miRNA:   3'- gCUCGGCCGuUU--------------CGCUCGCAcCAGUu -5'
6387 5' -57.2 NC_001847.1 + 71446 0.73 0.439504
Target:  5'- aCGGGCgCGGCuuuGAGCuGAGCGUGGa--- -3'
miRNA:   3'- -GCUCG-GCCGu--UUCG-CUCGCACCaguu -5'
6387 5' -57.2 NC_001847.1 + 67208 0.68 0.720031
Target:  5'- cCGuGCCGaGC--GGCGGGCGcgcGGUCGAa -3'
miRNA:   3'- -GCuCGGC-CGuuUCGCUCGCa--CCAGUU- -5'
6387 5' -57.2 NC_001847.1 + 65107 0.68 0.679392
Target:  5'- -aGGCCGcGCucAGCGAGCGccGGUUAAu -3'
miRNA:   3'- gcUCGGC-CGuuUCGCUCGCa-CCAGUU- -5'
6387 5' -57.2 NC_001847.1 + 63438 0.66 0.809597
Target:  5'- gCGGGCCGGCGcaccGcgcagacgcggacgcGGCGGGCcUGGUUg- -3'
miRNA:   3'- -GCUCGGCCGU----U---------------UCGCUCGcACCAGuu -5'
6387 5' -57.2 NC_001847.1 + 60250 0.68 0.679392
Target:  5'- -uAGCaCGGCGccgacuucgcAGGCGcuuGCGUGGUCAAu -3'
miRNA:   3'- gcUCG-GCCGU----------UUCGCu--CGCACCAGUU- -5'
6387 5' -57.2 NC_001847.1 + 59928 0.72 0.493214
Target:  5'- aGAGCCGGCGgaagggcgccacgcAAGCGuccGGCGUGG-CGu -3'
miRNA:   3'- gCUCGGCCGU--------------UUCGC---UCGCACCaGUu -5'
6387 5' -57.2 NC_001847.1 + 59400 0.72 0.476865
Target:  5'- gGAGCCGGCGGAG-GcGCGgcGGUCAu -3'
miRNA:   3'- gCUCGGCCGUUUCgCuCGCa-CCAGUu -5'
6387 5' -57.2 NC_001847.1 + 57159 0.67 0.759436
Target:  5'- aCGAGCUgGGCGAGGgGcGCGUGuUCAu -3'
miRNA:   3'- -GCUCGG-CCGUUUCgCuCGCACcAGUu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.