miRNA display CGI


Results 41 - 60 of 73 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6387 5' -57.2 NC_001847.1 + 56893 0.67 0.769023
Target:  5'- --cGCCGGCGAcggcgacgccGGCGGGCG-GGUg-- -3'
miRNA:   3'- gcuCGGCCGUU----------UCGCUCGCaCCAguu -5'
6387 5' -57.2 NC_001847.1 + 54811 0.68 0.709964
Target:  5'- cCGcGCUGGCGAGcGCGGGCacgGUGGUgGAc -3'
miRNA:   3'- -GCuCGGCCGUUU-CGCUCG---CACCAgUU- -5'
6387 5' -57.2 NC_001847.1 + 52126 0.66 0.796997
Target:  5'- gCGGGCCGGCGGcgccccAGCGgaccgacgaGGCcGUGGcCAGg -3'
miRNA:   3'- -GCUCGGCCGUU------UCGC---------UCG-CACCaGUU- -5'
6387 5' -57.2 NC_001847.1 + 50168 0.67 0.759436
Target:  5'- uCGAGgCGGCcauGAGCacGAGCGUGuUCGAc -3'
miRNA:   3'- -GCUCgGCCGu--UUCG--CUCGCACcAGUU- -5'
6387 5' -57.2 NC_001847.1 + 46602 0.69 0.658797
Target:  5'- --cGCCGGCGcGGCcucgcggcgcacGAGCGUGGUgAAg -3'
miRNA:   3'- gcuCGGCCGUuUCG------------CUCGCACCAgUU- -5'
6387 5' -57.2 NC_001847.1 + 44811 0.67 0.753628
Target:  5'- cCGAGCgCGGCAccGCGccccagucggcaaugGGCGcGGUCGc -3'
miRNA:   3'- -GCUCG-GCCGUuuCGC---------------UCGCaCCAGUu -5'
6387 5' -57.2 NC_001847.1 + 43972 0.69 0.616378
Target:  5'- aCGAGCUGGaucuauaUAAGGCGcGCGUGGcCAGc -3'
miRNA:   3'- -GCUCGGCC-------GUUUCGCuCGCACCaGUU- -5'
6387 5' -57.2 NC_001847.1 + 43439 0.66 0.787813
Target:  5'- -uGGCCGGCGucGCGAcccggggcgacgGCGcGGUCGc -3'
miRNA:   3'- gcUCGGCCGUuuCGCU------------CGCaCCAGUu -5'
6387 5' -57.2 NC_001847.1 + 41895 0.69 0.66911
Target:  5'- --cGCgCGGCGAGGCaGAG-GUGGUCGg -3'
miRNA:   3'- gcuCG-GCCGUUUCG-CUCgCACCAGUu -5'
6387 5' -57.2 NC_001847.1 + 39184 0.68 0.679392
Target:  5'- uCGAgGCUcaGGCccugGGAGCGGGCGaUGGUCAu -3'
miRNA:   3'- -GCU-CGG--CCG----UUUCGCUCGC-ACCAGUu -5'
6387 5' -57.2 NC_001847.1 + 37478 0.66 0.8149
Target:  5'- cCGGGcCCGGCcuGGC-AGCGgcgGGUCu- -3'
miRNA:   3'- -GCUC-GGCCGuuUCGcUCGCa--CCAGuu -5'
6387 5' -57.2 NC_001847.1 + 37324 0.66 0.832124
Target:  5'- gCGcGCCGaGCAcAGCGcuGGCGUgcGGUCAu -3'
miRNA:   3'- -GCuCGGC-CGUuUCGC--UCGCA--CCAGUu -5'
6387 5' -57.2 NC_001847.1 + 35891 0.7 0.565987
Target:  5'- gGAGUCGGCGGcGGCG-GCGUGGg--- -3'
miRNA:   3'- gCUCGGCCGUU-UCGCuCGCACCaguu -5'
6387 5' -57.2 NC_001847.1 + 33114 0.67 0.759436
Target:  5'- uGGGCCGGgGGccccguaccugcGGCGGGUGguggagugGGUCGAg -3'
miRNA:   3'- gCUCGGCCgUU------------UCGCUCGCa-------CCAGUU- -5'
6387 5' -57.2 NC_001847.1 + 32647 0.67 0.739926
Target:  5'- aCGAGCUGG-AGGGCGAG-GUGGaCGg -3'
miRNA:   3'- -GCUCGGCCgUUUCGCUCgCACCaGUu -5'
6387 5' -57.2 NC_001847.1 + 31736 0.74 0.386751
Target:  5'- aCGAGCCcuauGUcGAGCGGcGCGUGGUCAGc -3'
miRNA:   3'- -GCUCGGc---CGuUUCGCU-CGCACCAGUU- -5'
6387 5' -57.2 NC_001847.1 + 26749 0.66 0.822739
Target:  5'- uGGGCCGuaGAGcGCGGGUGcgcggccUGGUCAGu -3'
miRNA:   3'- gCUCGGCcgUUU-CGCUCGC-------ACCAGUU- -5'
6387 5' -57.2 NC_001847.1 + 24756 0.67 0.778485
Target:  5'- -cAGCCGGCugagguGCGAcGCGcGGUCGu -3'
miRNA:   3'- gcUCGGCCGuuu---CGCU-CGCaCCAGUu -5'
6387 5' -57.2 NC_001847.1 + 23389 0.67 0.749734
Target:  5'- gGGGCUGGguGGGCGgagcucacuuGGCGgGGUCGu -3'
miRNA:   3'- gCUCGGCCguUUCGC----------UCGCaCCAGUu -5'
6387 5' -57.2 NC_001847.1 + 22474 0.66 0.8149
Target:  5'- gGAGCCgucgcagguggGGCAAGGCuGGCcGUGGcUCAu -3'
miRNA:   3'- gCUCGG-----------CCGUUUCGcUCG-CACC-AGUu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.