miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6387 5' -57.2 NC_001847.1 + 124236 0.82 0.11586
Target:  5'- uCGGGCCGGCcGAGCGAGCG-GGcCAAa -3'
miRNA:   3'- -GCUCGGCCGuUUCGCUCGCaCCaGUU- -5'
6387 5' -57.2 NC_001847.1 + 19267 0.68 0.699829
Target:  5'- gCGAGCCGGCGGcgcAGCGucuguGCGgcgGGcCGc -3'
miRNA:   3'- -GCUCGGCCGUU---UCGCu----CGCa--CCaGUu -5'
6387 5' -57.2 NC_001847.1 + 67208 0.68 0.720031
Target:  5'- cCGuGCCGaGC--GGCGGGCGcgcGGUCGAa -3'
miRNA:   3'- -GCuCGGC-CGuuUCGCUCGCa--CCAGUU- -5'
6387 5' -57.2 NC_001847.1 + 106100 0.66 0.832124
Target:  5'- gCGAGCaCGGCGcgcagcucGGCGAGCGcGGcgCGGg -3'
miRNA:   3'- -GCUCG-GCCGUu-------UCGCUCGCaCCa-GUU- -5'
6387 5' -57.2 NC_001847.1 + 71446 0.73 0.439504
Target:  5'- aCGGGCgCGGCuuuGAGCuGAGCGUGGa--- -3'
miRNA:   3'- -GCUCG-GCCGu--UUCG-CUCGCACCaguu -5'
6387 5' -57.2 NC_001847.1 + 59400 0.72 0.476865
Target:  5'- gGAGCCGGCGGAG-GcGCGgcGGUCAu -3'
miRNA:   3'- gCUCGGCCGUUUCgCuCGCa-CCAGUu -5'
6387 5' -57.2 NC_001847.1 + 13984 0.71 0.525652
Target:  5'- -uGGCCGGC-AAGCG-GCG-GGUCAu -3'
miRNA:   3'- gcUCGGCCGuUUCGCuCGCaCCAGUu -5'
6387 5' -57.2 NC_001847.1 + 75650 0.71 0.549739
Target:  5'- gGAGCCGGaggcGCGGGCGUugcucgugaaggccgGGUCGAu -3'
miRNA:   3'- gCUCGGCCguuuCGCUCGCA---------------CCAGUU- -5'
6387 5' -57.2 NC_001847.1 + 108039 0.7 0.586463
Target:  5'- -cGGCCGGCGGGGCGcGCGcGG-CAAa -3'
miRNA:   3'- gcUCGGCCGUUUCGCuCGCaCCaGUU- -5'
6387 5' -57.2 NC_001847.1 + 73532 0.68 0.686567
Target:  5'- uGAGCCGGCuGAuugcggaggugggcGCGGGCGU-GUCGc -3'
miRNA:   3'- gCUCGGCCGuUU--------------CGCUCGCAcCAGUu -5'
6387 5' -57.2 NC_001847.1 + 43972 0.69 0.616378
Target:  5'- aCGAGCUGGaucuauaUAAGGCGcGCGUGGcCAGc -3'
miRNA:   3'- -GCUCGGCC-------GUUUCGCuCGCACCaGUU- -5'
6387 5' -57.2 NC_001847.1 + 95657 0.7 0.576204
Target:  5'- gGAGCCuGCGcGGCGGGC-UGGUCu- -3'
miRNA:   3'- gCUCGGcCGUuUCGCUCGcACCAGuu -5'
6387 5' -57.2 NC_001847.1 + 101090 0.76 0.294494
Target:  5'- cCGGGUCGGCGGGGCGGGCG-GG-CGc -3'
miRNA:   3'- -GCUCGGCCGUUUCGCUCGCaCCaGUu -5'
6387 5' -57.2 NC_001847.1 + 46602 0.69 0.658797
Target:  5'- --cGCCGGCGcGGCcucgcggcgcacGAGCGUGGUgAAg -3'
miRNA:   3'- gcuCGGCCGUuUCG------------CUCGCACCAgUU- -5'
6387 5' -57.2 NC_001847.1 + 31736 0.74 0.386751
Target:  5'- aCGAGCCcuauGUcGAGCGGcGCGUGGUCAGc -3'
miRNA:   3'- -GCUCGGc---CGuUUCGCU-CGCACCAGUU- -5'
6387 5' -57.2 NC_001847.1 + 35891 0.7 0.565987
Target:  5'- gGAGUCGGCGGcGGCG-GCGUGGg--- -3'
miRNA:   3'- gCUCGGCCGUU-UCGCuCGCACCaguu -5'
6387 5' -57.2 NC_001847.1 + 60250 0.68 0.679392
Target:  5'- -uAGCaCGGCGccgacuucgcAGGCGcuuGCGUGGUCAAu -3'
miRNA:   3'- gcUCG-GCCGU----------UUCGCu--CGCACCAGUU- -5'
6387 5' -57.2 NC_001847.1 + 54811 0.68 0.709964
Target:  5'- cCGcGCUGGCGAGcGCGGGCacgGUGGUgGAc -3'
miRNA:   3'- -GCuCGGCCGUUU-CGCUCG---CACCAgUU- -5'
6387 5' -57.2 NC_001847.1 + 15420 0.73 0.430427
Target:  5'- gGAGCgCGGCAcGGCGAGC-UGGUUu- -3'
miRNA:   3'- gCUCG-GCCGUuUCGCUCGcACCAGuu -5'
6387 5' -57.2 NC_001847.1 + 59928 0.72 0.493214
Target:  5'- aGAGCCGGCGgaagggcgccacgcAAGCGuccGGCGUGG-CGu -3'
miRNA:   3'- gCUCGGCCGU--------------UUCGC---UCGCACCaGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.