miRNA display CGI


Results 21 - 40 of 73 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6387 5' -57.2 NC_001847.1 + 60250 0.68 0.679392
Target:  5'- -uAGCaCGGCGccgacuucgcAGGCGcuuGCGUGGUCAAu -3'
miRNA:   3'- gcUCG-GCCGU----------UUCGCu--CGCACCAGUU- -5'
6387 5' -57.2 NC_001847.1 + 75650 0.71 0.549739
Target:  5'- gGAGCCGGaggcGCGGGCGUugcucgugaaggccgGGUCGAu -3'
miRNA:   3'- gCUCGGCCguuuCGCUCGCA---------------CCAGUU- -5'
6387 5' -57.2 NC_001847.1 + 115772 0.66 0.8149
Target:  5'- gGAGCCGGCucGGCcaGAGCGU--UCGc -3'
miRNA:   3'- gCUCGGCCGuuUCG--CUCGCAccAGUu -5'
6387 5' -57.2 NC_001847.1 + 56893 0.67 0.769023
Target:  5'- --cGCCGGCGAcggcgacgccGGCGGGCG-GGUg-- -3'
miRNA:   3'- gcuCGGCCGUU----------UCGCUCGCaCCAguu -5'
6387 5' -57.2 NC_001847.1 + 67208 0.68 0.720031
Target:  5'- cCGuGCCGaGC--GGCGGGCGcgcGGUCGAa -3'
miRNA:   3'- -GCuCGGC-CGuuUCGCUCGCa--CCAGUU- -5'
6387 5' -57.2 NC_001847.1 + 13984 0.71 0.525652
Target:  5'- -uGGCCGGC-AAGCG-GCG-GGUCAu -3'
miRNA:   3'- gcUCGGCCGuUUCGCuCGCaCCAGUu -5'
6387 5' -57.2 NC_001847.1 + 87939 0.67 0.759436
Target:  5'- -cGGCCGcGCAcgcGGUGAGCGUGuUCAAa -3'
miRNA:   3'- gcUCGGC-CGUu--UCGCUCGCACcAGUU- -5'
6387 5' -57.2 NC_001847.1 + 59928 0.72 0.493214
Target:  5'- aGAGCCGGCGgaagggcgccacgcAAGCGuccGGCGUGG-CGu -3'
miRNA:   3'- gCUCGGCCGU--------------UUCGC---UCGCACCaGUu -5'
6387 5' -57.2 NC_001847.1 + 59400 0.72 0.476865
Target:  5'- gGAGCCGGCGGAG-GcGCGgcGGUCAu -3'
miRNA:   3'- gCUCGGCCGUUUCgCuCGCa-CCAGUu -5'
6387 5' -57.2 NC_001847.1 + 87843 0.68 0.720031
Target:  5'- --cGCCGGCGGGcgugauggcccGCGGGCcuGUGGUCGc -3'
miRNA:   3'- gcuCGGCCGUUU-----------CGCUCG--CACCAGUu -5'
6387 5' -57.2 NC_001847.1 + 26749 0.66 0.822739
Target:  5'- uGGGCCGuaGAGcGCGGGUGcgcggccUGGUCAGu -3'
miRNA:   3'- gCUCGGCcgUUU-CGCUCGC-------ACCAGUU- -5'
6387 5' -57.2 NC_001847.1 + 73532 0.68 0.686567
Target:  5'- uGAGCCGGCuGAuugcggaggugggcGCGGGCGU-GUCGc -3'
miRNA:   3'- gCUCGGCCGuUU--------------CGCUCGCAcCAGUu -5'
6387 5' -57.2 NC_001847.1 + 126202 0.67 0.749734
Target:  5'- gGGGCUGGguGGGCGgagcucacuuGGCGgGGUCGu -3'
miRNA:   3'- gCUCGGCCguUUCGC----------UCGCaCCAGUu -5'
6387 5' -57.2 NC_001847.1 + 24756 0.67 0.778485
Target:  5'- -cAGCCGGCugagguGCGAcGCGcGGUCGu -3'
miRNA:   3'- gcUCGGCCGuuu---CGCU-CGCaCCAGUu -5'
6387 5' -57.2 NC_001847.1 + 125211 0.66 0.796997
Target:  5'- cCGGGCC-GC--GGCGAGCGUGcUCGu -3'
miRNA:   3'- -GCUCGGcCGuuUCGCUCGCACcAGUu -5'
6387 5' -57.2 NC_001847.1 + 3806 0.7 0.611207
Target:  5'- gCGuGCCGGCAcggggcgucggccGCGAGCGUGG-CGu -3'
miRNA:   3'- -GCuCGGCCGUuu-----------CGCUCGCACCaGUu -5'
6387 5' -57.2 NC_001847.1 + 35891 0.7 0.565987
Target:  5'- gGAGUCGGCGGcGGCG-GCGUGGg--- -3'
miRNA:   3'- gCUCGGCCGUU-UCGCuCGCACCaguu -5'
6387 5' -57.2 NC_001847.1 + 44811 0.67 0.753628
Target:  5'- cCGAGCgCGGCAccGCGccccagucggcaaugGGCGcGGUCGc -3'
miRNA:   3'- -GCUCG-GCCGUuuCGC---------------UCGCaCCAGUu -5'
6387 5' -57.2 NC_001847.1 + 81592 0.7 0.564967
Target:  5'- gCGAGCgCGGCGucgguugAGGCGAGCaaGUGGgCAAa -3'
miRNA:   3'- -GCUCG-GCCGU-------UUCGCUCG--CACCaGUU- -5'
6387 5' -57.2 NC_001847.1 + 5226 0.7 0.586463
Target:  5'- -cGGCCGGCGGGGCGcGCGcGG-CAAa -3'
miRNA:   3'- gcUCGGCCGUUUCGCuCGCaCCaGUU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.