miRNA display CGI


Results 61 - 73 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6387 5' -57.2 NC_001847.1 + 120932 0.72 0.457981
Target:  5'- gGGGCgGGCGc-GCGGGCGUGGUg-- -3'
miRNA:   3'- gCUCGgCCGUuuCGCUCGCACCAguu -5'
6387 5' -57.2 NC_001847.1 + 81592 0.7 0.564967
Target:  5'- gCGAGCgCGGCGucgguugAGGCGAGCaaGUGGgCAAa -3'
miRNA:   3'- -GCUCG-GCCGU-------UUCGCUCG--CACCaGUU- -5'
6387 5' -57.2 NC_001847.1 + 5226 0.7 0.586463
Target:  5'- -cGGCCGGCGGGGCGcGCGcGG-CAAa -3'
miRNA:   3'- gcUCGGCCGUUUCGCuCGCaCCaGUU- -5'
6387 5' -57.2 NC_001847.1 + 134171 0.69 0.627761
Target:  5'- gCGGGCCGGCGcauagacgcccGGCGcAGCGUGGa--- -3'
miRNA:   3'- -GCUCGGCCGUu----------UCGC-UCGCACCaguu -5'
6387 5' -57.2 NC_001847.1 + 116977 0.7 0.596755
Target:  5'- uGGGCCcGCuGGGGCGAGCGUGGc--- -3'
miRNA:   3'- gCUCGGcCG-UUUCGCUCGCACCaguu -5'
6387 5' -57.2 NC_001847.1 + 14207 0.69 0.657765
Target:  5'- gGGGCUGGCGgucAGGCcggccggGGGCGUGGUgAGg -3'
miRNA:   3'- gCUCGGCCGU---UUCG-------CUCGCACCAgUU- -5'
6387 5' -57.2 NC_001847.1 + 111315 0.69 0.657765
Target:  5'- gGGGCCGuGCGcgcgcugGAccGCGAGCaGUGGUCGGu -3'
miRNA:   3'- gCUCGGC-CGU-------UU--CGCUCG-CACCAGUU- -5'
6387 5' -57.2 NC_001847.1 + 95935 0.69 0.66808
Target:  5'- uGAGcCCGGCGccggaacgcuggcGGGCGAGCGUGaGcgCAGc -3'
miRNA:   3'- gCUC-GGCCGU-------------UUCGCUCGCAC-Ca-GUU- -5'
6387 5' -57.2 NC_001847.1 + 41895 0.69 0.66911
Target:  5'- --cGCgCGGCGAGGCaGAG-GUGGUCGg -3'
miRNA:   3'- gcuCG-GCCGUUUCG-CUCgCACCAGUu -5'
6387 5' -57.2 NC_001847.1 + 134646 0.68 0.679392
Target:  5'- gCGGGCCGGCAgcAGGCGcggaGGCGcGGgCAc -3'
miRNA:   3'- -GCUCGGCCGU--UUCGC----UCGCaCCaGUu -5'
6387 5' -57.2 NC_001847.1 + 39184 0.68 0.679392
Target:  5'- uCGAgGCUcaGGCccugGGAGCGGGCGaUGGUCAu -3'
miRNA:   3'- -GCU-CGG--CCG----UUUCGCUCGC-ACCAGUu -5'
6387 5' -57.2 NC_001847.1 + 65107 0.68 0.679392
Target:  5'- -aGGCCGcGCucAGCGAGCGccGGUUAAu -3'
miRNA:   3'- gcUCGGC-CGuuUCGCUCGCa-CCAGUU- -5'
6387 5' -57.2 NC_001847.1 + 37324 0.66 0.832124
Target:  5'- gCGcGCCGaGCAcAGCGcuGGCGUgcGGUCAu -3'
miRNA:   3'- -GCuCGGC-CGUuUCGC--UCGCA--CCAGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.