Results 21 - 40 of 73 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6387 | 5' | -57.2 | NC_001847.1 | + | 3287 | 0.66 | 0.832124 |
Target: 5'- gCGAGCaCGGCGcgcagcucGGCGAGCGcGGcgCGGg -3' miRNA: 3'- -GCUCG-GCCGUu-------UCGCUCGCaCCa-GUU- -5' |
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6387 | 5' | -57.2 | NC_001847.1 | + | 16847 | 0.66 | 0.823601 |
Target: 5'- uCGGGgCGGCGcucgAGGCGAGCG-GGcUCc- -3' miRNA: 3'- -GCUCgGCCGU----UUCGCUCGCaCC-AGuu -5' |
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6387 | 5' | -57.2 | NC_001847.1 | + | 37478 | 0.66 | 0.8149 |
Target: 5'- cCGGGcCCGGCcuGGC-AGCGgcgGGUCu- -3' miRNA: 3'- -GCUC-GGCCGuuUCGcUCGCa--CCAGuu -5' |
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6387 | 5' | -57.2 | NC_001847.1 | + | 22474 | 0.66 | 0.8149 |
Target: 5'- gGAGCCgucgcagguggGGCAAGGCuGGCcGUGGcUCAu -3' miRNA: 3'- gCUCGG-----------CCGUUUCGcUCG-CACC-AGUu -5' |
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6387 | 5' | -57.2 | NC_001847.1 | + | 22398 | 0.66 | 0.796997 |
Target: 5'- cCGGGCC-GC--GGCGAGCGUGcUCGu -3' miRNA: 3'- -GCUCGGcCGuuUCGCUCGCACcAGUu -5' |
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6387 | 5' | -57.2 | NC_001847.1 | + | 52126 | 0.66 | 0.796997 |
Target: 5'- gCGGGCCGGCGGcgccccAGCGgaccgacgaGGCcGUGGcCAGg -3' miRNA: 3'- -GCUCGGCCGUU------UCGC---------UCG-CACCaGUU- -5' |
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6387 | 5' | -57.2 | NC_001847.1 | + | 116682 | 0.67 | 0.778485 |
Target: 5'- uGGGuCCGGCGcuGCGGGCGcGG-CAc -3' miRNA: 3'- gCUC-GGCCGUuuCGCUCGCaCCaGUu -5' |
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6387 | 5' | -57.2 | NC_001847.1 | + | 125445 | 0.67 | 0.778485 |
Target: 5'- gCGuGGCUGGCcgGAGGaCGGGCG-GGUCGg -3' miRNA: 3'- -GC-UCGGCCG--UUUC-GCUCGCaCCAGUu -5' |
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6387 | 5' | -57.2 | NC_001847.1 | + | 109231 | 0.67 | 0.76807 |
Target: 5'- gCGGGUCGGCGggcgaaagacaaaAAGCcAGCG-GGUCGg -3' miRNA: 3'- -GCUCGGCCGU-------------UUCGcUCGCaCCAGUu -5' |
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6387 | 5' | -57.2 | NC_001847.1 | + | 23389 | 0.67 | 0.749734 |
Target: 5'- gGGGCUGGguGGGCGgagcucacuuGGCGgGGUCGu -3' miRNA: 3'- gCUCGGCCguUUCGC----------UCGCaCCAGUu -5' |
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6387 | 5' | -57.2 | NC_001847.1 | + | 14843 | 0.67 | 0.749734 |
Target: 5'- -cAGCCGGCcccgcagcGCGAGCGUugcgucGGUCGGg -3' miRNA: 3'- gcUCGGCCGuuu-----CGCUCGCA------CCAGUU- -5' |
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6387 | 5' | -57.2 | NC_001847.1 | + | 44811 | 0.67 | 0.753628 |
Target: 5'- cCGAGCgCGGCAccGCGccccagucggcaaugGGCGcGGUCGc -3' miRNA: 3'- -GCUCG-GCCGUuuCGC---------------UCGCaCCAGUu -5' |
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6387 | 5' | -57.2 | NC_001847.1 | + | 33114 | 0.67 | 0.759436 |
Target: 5'- uGGGCCGGgGGccccguaccugcGGCGGGUGguggagugGGUCGAg -3' miRNA: 3'- gCUCGGCCgUU------------UCGCUCGCa-------CCAGUU- -5' |
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6387 | 5' | -57.2 | NC_001847.1 | + | 75491 | 0.67 | 0.759436 |
Target: 5'- aCGGGCgGGC---GCGAGCG-GGcUCAAa -3' miRNA: 3'- -GCUCGgCCGuuuCGCUCGCaCC-AGUU- -5' |
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6387 | 5' | -57.2 | NC_001847.1 | + | 82305 | 0.67 | 0.759436 |
Target: 5'- cCGGGgCGGgAGAauGCGGGCGgGGUCGc -3' miRNA: 3'- -GCUCgGCCgUUU--CGCUCGCaCCAGUu -5' |
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6387 | 5' | -57.2 | NC_001847.1 | + | 117430 | 0.67 | 0.759436 |
Target: 5'- cCGAGCCGcuguacguGCAcuGCG-GCGUGGcCGAc -3' miRNA: 3'- -GCUCGGC--------CGUuuCGCuCGCACCaGUU- -5' |
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6387 | 5' | -57.2 | NC_001847.1 | + | 106100 | 0.66 | 0.832124 |
Target: 5'- gCGAGCaCGGCGcgcagcucGGCGAGCGcGGcgCGGg -3' miRNA: 3'- -GCUCG-GCCGUu-------UCGCUCGCaCCa-GUU- -5' |
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6387 | 5' | -57.2 | NC_001847.1 | + | 101090 | 0.76 | 0.294494 |
Target: 5'- cCGGGUCGGCGGGGCGGGCG-GG-CGc -3' miRNA: 3'- -GCUCGGCCGUUUCGCUCGCaCCaGUu -5' |
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6387 | 5' | -57.2 | NC_001847.1 | + | 31736 | 0.74 | 0.386751 |
Target: 5'- aCGAGCCcuauGUcGAGCGGcGCGUGGUCAGc -3' miRNA: 3'- -GCUCGGc---CGuUUCGCU-CGCACCAGUU- -5' |
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6387 | 5' | -57.2 | NC_001847.1 | + | 15420 | 0.73 | 0.430427 |
Target: 5'- gGAGCgCGGCAcGGCGAGC-UGGUUu- -3' miRNA: 3'- gCUCG-GCCGUuUCGCUCGcACCAGuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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