Results 61 - 73 of 73 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6387 | 5' | -57.2 | NC_001847.1 | + | 59400 | 0.72 | 0.476865 |
Target: 5'- gGAGCCGGCGGAG-GcGCGgcGGUCAu -3' miRNA: 3'- gCUCGGCCGUUUCgCuCGCa-CCAGUu -5' |
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6387 | 5' | -57.2 | NC_001847.1 | + | 59928 | 0.72 | 0.493214 |
Target: 5'- aGAGCCGGCGgaagggcgccacgcAAGCGuccGGCGUGG-CGu -3' miRNA: 3'- gCUCGGCCGU--------------UUCGC---UCGCACCaGUu -5' |
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6387 | 5' | -57.2 | NC_001847.1 | + | 13984 | 0.71 | 0.525652 |
Target: 5'- -uGGCCGGC-AAGCG-GCG-GGUCAu -3' miRNA: 3'- gcUCGGCCGuUUCGCuCGCaCCAGUu -5' |
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6387 | 5' | -57.2 | NC_001847.1 | + | 75650 | 0.71 | 0.549739 |
Target: 5'- gGAGCCGGaggcGCGGGCGUugcucgugaaggccgGGUCGAu -3' miRNA: 3'- gCUCGGCCguuuCGCUCGCA---------------CCAGUU- -5' |
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6387 | 5' | -57.2 | NC_001847.1 | + | 35891 | 0.7 | 0.565987 |
Target: 5'- gGAGUCGGCGGcGGCG-GCGUGGg--- -3' miRNA: 3'- gCUCGGCCGUU-UCGCuCGCACCaguu -5' |
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6387 | 5' | -57.2 | NC_001847.1 | + | 95657 | 0.7 | 0.576204 |
Target: 5'- gGAGCCuGCGcGGCGGGC-UGGUCu- -3' miRNA: 3'- gCUCGGcCGUuUCGCUCGcACCAGuu -5' |
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6387 | 5' | -57.2 | NC_001847.1 | + | 108039 | 0.7 | 0.586463 |
Target: 5'- -cGGCCGGCGGGGCGcGCGcGG-CAAa -3' miRNA: 3'- gcUCGGCCGUUUCGCuCGCaCCaGUU- -5' |
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6387 | 5' | -57.2 | NC_001847.1 | + | 3806 | 0.7 | 0.611207 |
Target: 5'- gCGuGCCGGCAcggggcgucggccGCGAGCGUGG-CGu -3' miRNA: 3'- -GCuCGGCCGUuu-----------CGCUCGCACCaGUu -5' |
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6387 | 5' | -57.2 | NC_001847.1 | + | 43972 | 0.69 | 0.616378 |
Target: 5'- aCGAGCUGGaucuauaUAAGGCGcGCGUGGcCAGc -3' miRNA: 3'- -GCUCGGCC-------GUUUCGCuCGCACCaGUU- -5' |
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6387 | 5' | -57.2 | NC_001847.1 | + | 46602 | 0.69 | 0.658797 |
Target: 5'- --cGCCGGCGcGGCcucgcggcgcacGAGCGUGGUgAAg -3' miRNA: 3'- gcuCGGCCGUuUCG------------CUCGCACCAgUU- -5' |
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6387 | 5' | -57.2 | NC_001847.1 | + | 60250 | 0.68 | 0.679392 |
Target: 5'- -uAGCaCGGCGccgacuucgcAGGCGcuuGCGUGGUCAAu -3' miRNA: 3'- gcUCG-GCCGU----------UUCGCu--CGCACCAGUU- -5' |
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6387 | 5' | -57.2 | NC_001847.1 | + | 73532 | 0.68 | 0.686567 |
Target: 5'- uGAGCCGGCuGAuugcggaggugggcGCGGGCGU-GUCGc -3' miRNA: 3'- gCUCGGCCGuUU--------------CGCUCGCAcCAGUu -5' |
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6387 | 5' | -57.2 | NC_001847.1 | + | 124236 | 0.82 | 0.11586 |
Target: 5'- uCGGGCCGGCcGAGCGAGCG-GGcCAAa -3' miRNA: 3'- -GCUCGGCCGuUUCGCUCGCaCCaGUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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