miRNA display CGI


Results 1 - 20 of 519 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6388 3' -58.2 NC_001847.1 + 44331 0.65 0.818762
Target:  5'- uGcCCGCCgGGCGugauuaacgcgCGCCCGGGGcUGCu -3'
miRNA:   3'- gC-GGCGG-UCGUuca--------GCGGGCCUU-ACG- -5'
6388 3' -58.2 NC_001847.1 + 30240 0.66 0.804888
Target:  5'- cCGCCGCCGcGCGGG-C-CCCGcGGG-GCg -3'
miRNA:   3'- -GCGGCGGU-CGUUCaGcGGGC-CUUaCG- -5'
6388 3' -58.2 NC_001847.1 + 28852 0.66 0.804888
Target:  5'- uGCCGCCGGUcgGGGaCGCCauGGccGCg -3'
miRNA:   3'- gCGGCGGUCG--UUCaGCGGgcCUuaCG- -5'
6388 3' -58.2 NC_001847.1 + 3099 0.66 0.804888
Target:  5'- cCGCgGCCGGCAGGccgCGgCCCGccgcgGCc -3'
miRNA:   3'- -GCGgCGGUCGUUCa--GC-GGGCcuua-CG- -5'
6388 3' -58.2 NC_001847.1 + 116654 0.66 0.804888
Target:  5'- aGCCGCgGGCAcgcuGGUgGCCUGc-GUGUg -3'
miRNA:   3'- gCGGCGgUCGU----UCAgCGGGCcuUACG- -5'
6388 3' -58.2 NC_001847.1 + 115120 0.66 0.804888
Target:  5'- gGCgGCC-GCAGGgcCGCCCuauuGGaAGUGCg -3'
miRNA:   3'- gCGgCGGuCGUUCa-GCGGG----CC-UUACG- -5'
6388 3' -58.2 NC_001847.1 + 58304 0.66 0.804888
Target:  5'- gGCgGCCGGCAGGccggcauggCGCCgCGuauAGUGCa -3'
miRNA:   3'- gCGgCGGUCGUUCa--------GCGG-GCc--UUACG- -5'
6388 3' -58.2 NC_001847.1 + 46318 0.66 0.804888
Target:  5'- gCGCCGagcgCAGCAcGGcCGCCCGcGGGgccGCg -3'
miRNA:   3'- -GCGGCg---GUCGU-UCaGCGGGC-CUUa--CG- -5'
6388 3' -58.2 NC_001847.1 + 15781 0.66 0.804888
Target:  5'- gCGCCGaguuucgagaaCCAGC-AGUC-CCCGGccgGCa -3'
miRNA:   3'- -GCGGC-----------GGUCGuUCAGcGGGCCuuaCG- -5'
6388 3' -58.2 NC_001847.1 + 69422 0.66 0.804888
Target:  5'- gCGCCGCCccGGCGGG-C-UCUGGGAUGa -3'
miRNA:   3'- -GCGGCGG--UCGUUCaGcGGGCCUUACg -5'
6388 3' -58.2 NC_001847.1 + 127411 0.66 0.804888
Target:  5'- cCGCCGCCuccGCGcccgCGCCCugcgccuGAAUGCc -3'
miRNA:   3'- -GCGGCGGu--CGUuca-GCGGGc------CUUACG- -5'
6388 3' -58.2 NC_001847.1 + 35473 0.66 0.812743
Target:  5'- cCGCaaaGCCAGCcuuugGGGUCcggcgcgcguuauGCUCGGcGUGCg -3'
miRNA:   3'- -GCGg--CGGUCG-----UUCAG-------------CGGGCCuUACG- -5'
6388 3' -58.2 NC_001847.1 + 64003 0.66 0.813607
Target:  5'- uGCCGCgAGCucua--CCCGGGcgGCg -3'
miRNA:   3'- gCGGCGgUCGuucagcGGGCCUuaCG- -5'
6388 3' -58.2 NC_001847.1 + 72542 0.66 0.813607
Target:  5'- uCGCgGCgAGCGGGgcgaUCGCCgCGGg--GCa -3'
miRNA:   3'- -GCGgCGgUCGUUC----AGCGG-GCCuuaCG- -5'
6388 3' -58.2 NC_001847.1 + 67844 0.66 0.813607
Target:  5'- gGCUGCCGGCGcuGG-CGCgCGGcucGCg -3'
miRNA:   3'- gCGGCGGUCGU--UCaGCGgGCCuuaCG- -5'
6388 3' -58.2 NC_001847.1 + 42725 0.66 0.813607
Target:  5'- gCGCgGCgGGC-GGcCGCgCGGGcgGCg -3'
miRNA:   3'- -GCGgCGgUCGuUCaGCGgGCCUuaCG- -5'
6388 3' -58.2 NC_001847.1 + 106946 0.66 0.813607
Target:  5'- aCGCCGCCGuggcgcGCAGG-CGCgCGGcc-GCc -3'
miRNA:   3'- -GCGGCGGU------CGUUCaGCGgGCCuuaCG- -5'
6388 3' -58.2 NC_001847.1 + 106377 0.66 0.813607
Target:  5'- uGUCGUCGGCGAGaagGCCCGcGucgGCa -3'
miRNA:   3'- gCGGCGGUCGUUCag-CGGGC-CuuaCG- -5'
6388 3' -58.2 NC_001847.1 + 22091 0.66 0.813607
Target:  5'- aGCgGgcCCGGCAGG-CGCgCCGGGG-GCg -3'
miRNA:   3'- gCGgC--GGUCGUUCaGCG-GGCCUUaCG- -5'
6388 3' -58.2 NC_001847.1 + 37137 0.66 0.813607
Target:  5'- gCGCaCGcCCAGCGGGccuuuggggCGgCCGGGAaGCg -3'
miRNA:   3'- -GCG-GC-GGUCGUUCa--------GCgGGCCUUaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.