miRNA display CGI


Results 81 - 100 of 519 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6388 3' -58.2 NC_001847.1 + 3252 0.66 0.786995
Target:  5'- uCGCCGgCGGCAGGggCGCCgGcGccGCg -3'
miRNA:   3'- -GCGGCgGUCGUUCa-GCGGgCcUuaCG- -5'
6388 3' -58.2 NC_001847.1 + 99603 0.66 0.786995
Target:  5'- gCGCCGCCucGGCAGccacgaccUCGCCgaGG-AUGCg -3'
miRNA:   3'- -GCGGCGG--UCGUUc-------AGCGGg-CCuUACG- -5'
6388 3' -58.2 NC_001847.1 + 132286 0.66 0.786995
Target:  5'- aCGaCGCCcGCGAGUCGCagCGGcaugGCg -3'
miRNA:   3'- -GCgGCGGuCGUUCAGCGg-GCCuua-CG- -5'
6388 3' -58.2 NC_001847.1 + 28336 0.66 0.786995
Target:  5'- cCGgCGCCccGCGGGgccgcgCGCCCGGGcccccgGCg -3'
miRNA:   3'- -GCgGCGGu-CGUUCa-----GCGGGCCUua----CG- -5'
6388 3' -58.2 NC_001847.1 + 38421 0.66 0.786995
Target:  5'- uCGCCGCaggGGCGGGa-GCCCGaGGGgcggGCa -3'
miRNA:   3'- -GCGGCGg--UCGUUCagCGGGC-CUUa---CG- -5'
6388 3' -58.2 NC_001847.1 + 102413 0.66 0.792424
Target:  5'- aGCCGCCGGCcggaggccgaGAGgcgcuccaugaagCGCgCCGaGAcgGCg -3'
miRNA:   3'- gCGGCGGUCG----------UUCa------------GCG-GGC-CUuaCG- -5'
6388 3' -58.2 NC_001847.1 + 16213 0.66 0.796014
Target:  5'- gGCCGUCuGCGaagggcgacGGUauggGCCCGGuAGUGUg -3'
miRNA:   3'- gCGGCGGuCGU---------UCAg---CGGGCC-UUACG- -5'
6388 3' -58.2 NC_001847.1 + 27419 0.66 0.796014
Target:  5'- uGCCGCCGGCGcggucgguGUCGUUCGcagcgGCg -3'
miRNA:   3'- gCGGCGGUCGUu-------CAGCGGGCcuua-CG- -5'
6388 3' -58.2 NC_001847.1 + 117261 0.67 0.75915
Target:  5'- cCGCCGCCcGCcc--CGCCCGaGGAcggGCg -3'
miRNA:   3'- -GCGGCGGuCGuucaGCGGGC-CUUa--CG- -5'
6388 3' -58.2 NC_001847.1 + 64194 0.67 0.75915
Target:  5'- cCGCgGCgGgaacaugcGCGGGUCgggguGCCCGGGcgGCg -3'
miRNA:   3'- -GCGgCGgU--------CGUUCAG-----CGGGCCUuaCG- -5'
6388 3' -58.2 NC_001847.1 + 72732 0.67 0.749636
Target:  5'- gGCaCGCgGGCAAcagCGCCgGcGggUGCg -3'
miRNA:   3'- gCG-GCGgUCGUUca-GCGGgC-CuuACG- -5'
6388 3' -58.2 NC_001847.1 + 103140 0.67 0.75915
Target:  5'- gGCCGCCGGCGcgcgaaGGUCcucgcgGCUCgaGGGcgGCg -3'
miRNA:   3'- gCGGCGGUCGU------UCAG------CGGG--CCUuaCG- -5'
6388 3' -58.2 NC_001847.1 + 84243 0.67 0.75915
Target:  5'- gGCCGCgCGGUAcGUgGCCUGcauGAUGCu -3'
miRNA:   3'- gCGGCG-GUCGUuCAgCGGGCc--UUACG- -5'
6388 3' -58.2 NC_001847.1 + 52695 0.67 0.75915
Target:  5'- aCGCgGCCGuGCGcggGGUUGCCgGGAAg-- -3'
miRNA:   3'- -GCGgCGGU-CGU---UCAGCGGgCCUUacg -5'
6388 3' -58.2 NC_001847.1 + 3330 0.67 0.768554
Target:  5'- uGCCGCCGGCGccGGcC-UCCGGGuagGCc -3'
miRNA:   3'- gCGGCGGUCGU--UCaGcGGGCCUua-CG- -5'
6388 3' -58.2 NC_001847.1 + 48067 0.67 0.75915
Target:  5'- gCGCCGCgaaaGGCGGGggcgcacgcCGCgCGGAAgcUGCa -3'
miRNA:   3'- -GCGGCGg---UCGUUCa--------GCGgGCCUU--ACG- -5'
6388 3' -58.2 NC_001847.1 + 3224 0.67 0.75915
Target:  5'- aGCCGCUcGCGcGcCGCCCGcgccGUGCu -3'
miRNA:   3'- gCGGCGGuCGUuCaGCGGGCcu--UACG- -5'
6388 3' -58.2 NC_001847.1 + 128190 0.67 0.749636
Target:  5'- gCGCCGCC-GCGAccccgCGCCUGGcccgucuucguGUGCa -3'
miRNA:   3'- -GCGGCGGuCGUUca---GCGGGCCu----------UACG- -5'
6388 3' -58.2 NC_001847.1 + 125482 0.67 0.749636
Target:  5'- uCGCgGCgGGCGcgaGGaCGCCCGGc-UGCu -3'
miRNA:   3'- -GCGgCGgUCGU---UCaGCGGGCCuuACG- -5'
6388 3' -58.2 NC_001847.1 + 100825 0.67 0.749636
Target:  5'- uCGCCGCagacGCAAGcgCGCCCGaagccucgcuGAcgGCc -3'
miRNA:   3'- -GCGGCGgu--CGUUCa-GCGGGC----------CUuaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.