miRNA display CGI


Results 61 - 80 of 519 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6388 3' -58.2 NC_001847.1 + 33887 0.73 0.418386
Target:  5'- gCGCCGCC-GCGcGUgGCCgCGGGcGUGCa -3'
miRNA:   3'- -GCGGCGGuCGUuCAgCGG-GCCU-UACG- -5'
6388 3' -58.2 NC_001847.1 + 86979 0.73 0.409744
Target:  5'- aCGCCGCCGGCcGGgccggcgCGCgCCGGcccgGCg -3'
miRNA:   3'- -GCGGCGGUCGuUCa------GCG-GGCCuua-CG- -5'
6388 3' -58.2 NC_001847.1 + 104902 0.73 0.401214
Target:  5'- aCGCCGCCAGCGAcacgcgcaccUCgGCCCGGGcgcGCg -3'
miRNA:   3'- -GCGGCGGUCGUUc---------AG-CGGGCCUua-CG- -5'
6388 3' -58.2 NC_001847.1 + 134380 0.73 0.391963
Target:  5'- gCGCCGCCGGCGgcGGgccggccUCGCCCuaGGGggGCc -3'
miRNA:   3'- -GCGGCGGUCGU--UC-------AGCGGG--CCUuaCG- -5'
6388 3' -58.2 NC_001847.1 + 58194 0.73 0.392798
Target:  5'- cCGCCuucgGCCAGCAGG-CGCuCCGGGcgGa -3'
miRNA:   3'- -GCGG----CGGUCGUUCaGCG-GGCCUuaCg -5'
6388 3' -58.2 NC_001847.1 + 132373 0.73 0.401214
Target:  5'- gGCCGCCGGCGGGg-GCgCCGGcgccgGCg -3'
miRNA:   3'- gCGGCGGUCGUUCagCG-GGCCuua--CG- -5'
6388 3' -58.2 NC_001847.1 + 105885 0.73 0.392798
Target:  5'- gCGCCGCCAGCg---CGUCCGGcgcGCa -3'
miRNA:   3'- -GCGGCGGUCGuucaGCGGGCCuuaCG- -5'
6388 3' -58.2 NC_001847.1 + 126232 0.73 0.418386
Target:  5'- gGUCGUCGGCGGGgCGUCCGGggUcgucgGCg -3'
miRNA:   3'- gCGGCGGUCGUUCaGCGGGCCuuA-----CG- -5'
6388 3' -58.2 NC_001847.1 + 31567 0.73 0.391963
Target:  5'- gCGCCGCCGGCGgcGGgccggccUCGCCCuaGGGggGCc -3'
miRNA:   3'- -GCGGCGGUCGU--UC-------AGCGGG--CCUuaCG- -5'
6388 3' -58.2 NC_001847.1 + 75397 0.73 0.384497
Target:  5'- aCGCgGCCAGCGAGUCGagcucgcgCCGGAc-GCc -3'
miRNA:   3'- -GCGgCGGUCGUUCAGCg-------GGCCUuaCG- -5'
6388 3' -58.2 NC_001847.1 + 1948 0.73 0.418386
Target:  5'- gGCCGCCGGCGc-UCGUccucgCCGGGcgGCg -3'
miRNA:   3'- gCGGCGGUCGUucAGCG-----GGCCUuaCG- -5'
6388 3' -58.2 NC_001847.1 + 121167 0.73 0.392798
Target:  5'- cCGCCGCUugccggccaggGGCGGGcUCGCCaCGGGccGCa -3'
miRNA:   3'- -GCGGCGG-----------UCGUUC-AGCGG-GCCUuaCG- -5'
6388 3' -58.2 NC_001847.1 + 134160 0.73 0.427139
Target:  5'- cCGCCGCCGGCGGcggaagccccGcCgGCCCGG-GUGCc -3'
miRNA:   3'- -GCGGCGGUCGUU----------CaG-CGGGCCuUACG- -5'
6388 3' -58.2 NC_001847.1 + 127286 0.72 0.444963
Target:  5'- gGCCGCCucuGCAGG-CGCcaCCGGcGGUGCc -3'
miRNA:   3'- gCGGCGGu--CGUUCaGCG--GGCC-UUACG- -5'
6388 3' -58.2 NC_001847.1 + 773 0.72 0.435108
Target:  5'- cCGCCGCCGGCGGcgccggccucgucGUCGUCCGacGAG-GCg -3'
miRNA:   3'- -GCGGCGGUCGUU-------------CAGCGGGC--CUUaCG- -5'
6388 3' -58.2 NC_001847.1 + 69141 0.72 0.444963
Target:  5'- gGCCGCCguGGCG---UGCCCGGcGGUGCa -3'
miRNA:   3'- gCGGCGG--UCGUucaGCGGGCC-UUACG- -5'
6388 3' -58.2 NC_001847.1 + 31236 0.72 0.435998
Target:  5'- gCGCCGCCcGCGgccgcGG-CGCCCGGcGUGg -3'
miRNA:   3'- -GCGGCGGuCGU-----UCaGCGGGCCuUACg -5'
6388 3' -58.2 NC_001847.1 + 113960 0.72 0.435998
Target:  5'- aCGCCGCCgGGCGcGUCGCCgCaGAA-GCg -3'
miRNA:   3'- -GCGGCGG-UCGUuCAGCGG-GcCUUaCG- -5'
6388 3' -58.2 NC_001847.1 + 29190 0.72 0.435998
Target:  5'- gCGCCGCCGGCGc--CGCCgGGcucccGGUGCu -3'
miRNA:   3'- -GCGGCGGUCGUucaGCGGgCC-----UUACG- -5'
6388 3' -58.2 NC_001847.1 + 27297 0.72 0.472459
Target:  5'- aGCCGCC-GCcGGUCGCCCGa---GCu -3'
miRNA:   3'- gCGGCGGuCGuUCAGCGGGCcuuaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.