miRNA display CGI


Results 1 - 20 of 519 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6388 3' -58.2 NC_001847.1 + 97715 1.12 0.001003
Target:  5'- gCGCCGCCAGCAAGUCGCCCGGAAUGCa -3'
miRNA:   3'- -GCGGCGGUCGUUCAGCGGGCCUUACG- -5'
6388 3' -58.2 NC_001847.1 + 89314 0.9 0.031104
Target:  5'- uGCCGcCCAGCGAGUgGCCCGGGcgGCa -3'
miRNA:   3'- gCGGC-GGUCGUUCAgCGGGCCUuaCG- -5'
6388 3' -58.2 NC_001847.1 + 33003 0.8 0.144925
Target:  5'- gCGCCGCCGu--GGUCGCgCGGAGUGCc -3'
miRNA:   3'- -GCGGCGGUcguUCAGCGgGCCUUACG- -5'
6388 3' -58.2 NC_001847.1 + 56064 0.8 0.152488
Target:  5'- gCGCCGCUgaagccugcgcGGCuGAGcgCGCCCGGggUGCg -3'
miRNA:   3'- -GCGGCGG-----------UCG-UUCa-GCGGGCCuuACG- -5'
6388 3' -58.2 NC_001847.1 + 134582 0.78 0.195893
Target:  5'- uCGCCGCCAgGCAGGUCaaucgugccCCCGGAGaGCg -3'
miRNA:   3'- -GCGGCGGU-CGUUCAGc--------GGGCCUUaCG- -5'
6388 3' -58.2 NC_001847.1 + 100548 0.78 0.195893
Target:  5'- gCGCCGCCGcGCcAG-CGCCCGGGccuUGCg -3'
miRNA:   3'- -GCGGCGGU-CGuUCaGCGGGCCUu--ACG- -5'
6388 3' -58.2 NC_001847.1 + 68889 0.78 0.195893
Target:  5'- uCGCCGCgAGCAuGcUCgGCCCGGAgaGUGCa -3'
miRNA:   3'- -GCGGCGgUCGUuC-AG-CGGGCCU--UACG- -5'
6388 3' -58.2 NC_001847.1 + 42165 0.78 0.216093
Target:  5'- aCGuuGCCGGCGGGU-GCUggCGGAAUGCg -3'
miRNA:   3'- -GCggCGGUCGUUCAgCGG--GCCUUACG- -5'
6388 3' -58.2 NC_001847.1 + 78263 0.77 0.226847
Target:  5'- cCGUCGCCGGCGGGcccguuggccgCGCCCGGGccGCc -3'
miRNA:   3'- -GCGGCGGUCGUUCa----------GCGGGCCUuaCG- -5'
6388 3' -58.2 NC_001847.1 + 76925 0.77 0.238051
Target:  5'- uGCCGcCCGGCGGGcagaucCGCCCGGAGcGCc -3'
miRNA:   3'- gCGGC-GGUCGUUCa-----GCGGGCCUUaCG- -5'
6388 3' -58.2 NC_001847.1 + 131904 0.77 0.243824
Target:  5'- uGCCGCCGGCGAGcacgGCgCGGGcgGCg -3'
miRNA:   3'- gCGGCGGUCGUUCag--CGgGCCUuaCG- -5'
6388 3' -58.2 NC_001847.1 + 29091 0.77 0.243824
Target:  5'- uGCCGCCGGCGAGcacgGCgCGGGcgGCg -3'
miRNA:   3'- gCGGCGGUCGUUCag--CGgGCCUuaCG- -5'
6388 3' -58.2 NC_001847.1 + 43001 0.76 0.25572
Target:  5'- aCGCCGCCGGgGGGgCGCgCCGGGccGCc -3'
miRNA:   3'- -GCGGCGGUCgUUCaGCG-GGCCUuaCG- -5'
6388 3' -58.2 NC_001847.1 + 81323 0.76 0.25572
Target:  5'- cCGCCGCCAGCcg--CGCCCGcGAcacgccuugcacGUGCg -3'
miRNA:   3'- -GCGGCGGUCGuucaGCGGGC-CU------------UACG- -5'
6388 3' -58.2 NC_001847.1 + 40971 0.76 0.274451
Target:  5'- uGCCGaCgAGCAGGUUGCgCCGGGccGCg -3'
miRNA:   3'- gCGGC-GgUCGUUCAGCG-GGCCUuaCG- -5'
6388 3' -58.2 NC_001847.1 + 65812 0.76 0.287539
Target:  5'- gCGCCGCCAGCAg--CGCCCGaGGcccGCg -3'
miRNA:   3'- -GCGGCGGUCGUucaGCGGGC-CUua-CG- -5'
6388 3' -58.2 NC_001847.1 + 48617 0.76 0.287539
Target:  5'- gCGCCGCCAGCAcgcgggcgcccAGcCGCCgCGcGAcgGUGCa -3'
miRNA:   3'- -GCGGCGGUCGU-----------UCaGCGG-GC-CU--UACG- -5'
6388 3' -58.2 NC_001847.1 + 52083 0.76 0.287539
Target:  5'- uCGCCGCCAGCAAccucGUgCGCUCGGucaugGCc -3'
miRNA:   3'- -GCGGCGGUCGUU----CA-GCGGGCCuua--CG- -5'
6388 3' -58.2 NC_001847.1 + 28733 0.76 0.287539
Target:  5'- gGCCGCgGGCAGcGUCGCCgCGcGcGUGCg -3'
miRNA:   3'- gCGGCGgUCGUU-CAGCGG-GC-CuUACG- -5'
6388 3' -58.2 NC_001847.1 + 79640 0.76 0.287539
Target:  5'- gCGCCGCCAGCAGcagggcccacGUCGCCCauagcaGGGcaGCg -3'
miRNA:   3'- -GCGGCGGUCGUU----------CAGCGGG------CCUuaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.