miRNA display CGI


Results 21 - 40 of 519 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6388 3' -58.2 NC_001847.1 + 47450 0.75 0.293587
Target:  5'- cCGCCGCCgcGGCGccgcagcagccccAG-CGCCCGGGccAUGCg -3'
miRNA:   3'- -GCGGCGG--UCGU-------------UCaGCGGGCCU--UACG- -5'
6388 3' -58.2 NC_001847.1 + 21360 0.75 0.294265
Target:  5'- gCGCCGUCGGCGgcucgGGcCGCCuCGGGcgGCu -3'
miRNA:   3'- -GCGGCGGUCGU-----UCaGCGG-GCCUuaCG- -5'
6388 3' -58.2 NC_001847.1 + 85101 0.75 0.299046
Target:  5'- gGCCGCCGGcCAGGUugaucaucacggcgCGCCCGGGGcccaGCa -3'
miRNA:   3'- gCGGCGGUC-GUUCA--------------GCGGGCCUUa---CG- -5'
6388 3' -58.2 NC_001847.1 + 122670 0.75 0.308083
Target:  5'- cCGCCGCCAcGCGGGaaGCCgCGGAG-GCu -3'
miRNA:   3'- -GCGGCGGU-CGUUCagCGG-GCCUUaCG- -5'
6388 3' -58.2 NC_001847.1 + 1782 0.75 0.315176
Target:  5'- gGcCCGCCAcGCAGGUC-CCgGGGAUGUa -3'
miRNA:   3'- gC-GGCGGU-CGUUCAGcGGgCCUUACG- -5'
6388 3' -58.2 NC_001847.1 + 46510 0.75 0.315176
Target:  5'- gCGuuGCCAGCGgcAG-CGCUCGGGggGCg -3'
miRNA:   3'- -GCggCGGUCGU--UCaGCGGGCCUuaCG- -5'
6388 3' -58.2 NC_001847.1 + 11530 0.75 0.322391
Target:  5'- aGCCGCCGGguGcugcguucgCGUCUGGAGUGCg -3'
miRNA:   3'- gCGGCGGUCguUca-------GCGGGCCUUACG- -5'
6388 3' -58.2 NC_001847.1 + 101857 0.75 0.329729
Target:  5'- uGCCGCgAGCAGGUCGCggaGGAGcucgccuuUGCg -3'
miRNA:   3'- gCGGCGgUCGUUCAGCGgg-CCUU--------ACG- -5'
6388 3' -58.2 NC_001847.1 + 30414 0.75 0.332698
Target:  5'- gGCCGCCGGCAAGcUCguggcgggcgcggagGCgCCGGGGcUGCa -3'
miRNA:   3'- gCGGCGGUCGUUC-AG---------------CG-GGCCUU-ACG- -5'
6388 3' -58.2 NC_001847.1 + 31877 0.74 0.33719
Target:  5'- uGCUGCCGGCGGagcccGUCGCgCGG-AUGCc -3'
miRNA:   3'- gCGGCGGUCGUU-----CAGCGgGCCuUACG- -5'
6388 3' -58.2 NC_001847.1 + 76418 0.74 0.344772
Target:  5'- gGCCGCCGG-AGGa-GCCCGGggUGg -3'
miRNA:   3'- gCGGCGGUCgUUCagCGGGCCuuACg -5'
6388 3' -58.2 NC_001847.1 + 62101 0.74 0.352476
Target:  5'- uGCuuCGCCAGCAGGUUGUCCGcGGccGCu -3'
miRNA:   3'- gCG--GCGGUCGUUCAGCGGGC-CUuaCG- -5'
6388 3' -58.2 NC_001847.1 + 17858 0.74 0.355592
Target:  5'- gCGuuGCCAGCGccgccgGGUCGCCCguccucgggcggggcGGGcgGCg -3'
miRNA:   3'- -GCggCGGUCGU------UCAGCGGG---------------CCUuaCG- -5'
6388 3' -58.2 NC_001847.1 + 99195 0.74 0.360302
Target:  5'- gCGCCGCCAGCAg--CGCCCaGGc--GCa -3'
miRNA:   3'- -GCGGCGGUCGUucaGCGGG-CCuuaCG- -5'
6388 3' -58.2 NC_001847.1 + 87326 0.74 0.360302
Target:  5'- gGCCGCCGGCAucccGUC-CCCGGugucgGCc -3'
miRNA:   3'- gCGGCGGUCGUu---CAGcGGGCCuua--CG- -5'
6388 3' -58.2 NC_001847.1 + 31230 0.74 0.360302
Target:  5'- gGCgCGCgaaAGCGGGgcgCGCCCGGAaauGUGCu -3'
miRNA:   3'- gCG-GCGg--UCGUUCa--GCGGGCCU---UACG- -5'
6388 3' -58.2 NC_001847.1 + 16892 0.74 0.368248
Target:  5'- gCGCaCGCCGcGCAGGUUuaccaGCCCGGGccGCu -3'
miRNA:   3'- -GCG-GCGGU-CGUUCAG-----CGGGCCUuaCG- -5'
6388 3' -58.2 NC_001847.1 + 53711 0.74 0.368248
Target:  5'- gCGCCGCCGGCGGcUCGCggggCGGAucgGCg -3'
miRNA:   3'- -GCGGCGGUCGUUcAGCGg---GCCUua-CG- -5'
6388 3' -58.2 NC_001847.1 + 18945 0.74 0.368248
Target:  5'- gCGCCGCC-GCGg--CGUCCGGGcgGCg -3'
miRNA:   3'- -GCGGCGGuCGUucaGCGGGCCUuaCG- -5'
6388 3' -58.2 NC_001847.1 + 108062 0.74 0.375501
Target:  5'- aCGCCuCCAGCGugggcgcGGUgcCGCCCGGGggGCu -3'
miRNA:   3'- -GCGGcGGUCGU-------UCA--GCGGGCCUuaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.