miRNA display CGI


Results 61 - 80 of 519 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6388 3' -58.2 NC_001847.1 + 132373 0.73 0.401214
Target:  5'- gGCCGCCGGCGGGg-GCgCCGGcgccgGCg -3'
miRNA:   3'- gCGGCGGUCGUUCagCG-GGCCuua--CG- -5'
6388 3' -58.2 NC_001847.1 + 86979 0.73 0.409744
Target:  5'- aCGCCGCCGGCcGGgccggcgCGCgCCGGcccgGCg -3'
miRNA:   3'- -GCGGCGGUCGuUCa------GCG-GGCCuua-CG- -5'
6388 3' -58.2 NC_001847.1 + 51972 0.73 0.413188
Target:  5'- cCGuCCGCCAGCccgucgggcguugggAGGUCGCCgggCGGGAcGCa -3'
miRNA:   3'- -GC-GGCGGUCG---------------UUCAGCGG---GCCUUaCG- -5'
6388 3' -58.2 NC_001847.1 + 23419 0.73 0.418386
Target:  5'- gGUCGUCGGCGGGgCGUCCGGggUcgucgGCg -3'
miRNA:   3'- gCGGCGGUCGUUCaGCGGGCCuuA-----CG- -5'
6388 3' -58.2 NC_001847.1 + 1948 0.73 0.418386
Target:  5'- gGCCGCCGGCGc-UCGUccucgCCGGGcgGCg -3'
miRNA:   3'- gCGGCGGUCGUucAGCG-----GGCCUuaCG- -5'
6388 3' -58.2 NC_001847.1 + 126232 0.73 0.418386
Target:  5'- gGUCGUCGGCGGGgCGUCCGGggUcgucgGCg -3'
miRNA:   3'- gCGGCGGUCGUUCaGCGGGCCuuA-----CG- -5'
6388 3' -58.2 NC_001847.1 + 33887 0.73 0.418386
Target:  5'- gCGCCGCC-GCGcGUgGCCgCGGGcGUGCa -3'
miRNA:   3'- -GCGGCGGuCGUuCAgCGG-GCCU-UACG- -5'
6388 3' -58.2 NC_001847.1 + 4842 0.73 0.418386
Target:  5'- gGCCGCCGGCGauaauguauGG-CGCCgGGAcggGCa -3'
miRNA:   3'- gCGGCGGUCGU---------UCaGCGGgCCUua-CG- -5'
6388 3' -58.2 NC_001847.1 + 113539 0.73 0.427139
Target:  5'- gCGCCGCCAGCGAGUUua--GGGggGCg -3'
miRNA:   3'- -GCGGCGGUCGUUCAGcgggCCUuaCG- -5'
6388 3' -58.2 NC_001847.1 + 27514 0.73 0.427139
Target:  5'- cCGCCGCCgcggcggcGGCGGGgaCGCCCGaGAAcgGCg -3'
miRNA:   3'- -GCGGCGG--------UCGUUCa-GCGGGC-CUUa-CG- -5'
6388 3' -58.2 NC_001847.1 + 134160 0.73 0.427139
Target:  5'- cCGCCGCCGGCGGcggaagccccGcCgGCCCGG-GUGCc -3'
miRNA:   3'- -GCGGCGGUCGUU----------CaG-CGGGCCuUACG- -5'
6388 3' -58.2 NC_001847.1 + 10726 0.73 0.427139
Target:  5'- gCGCCGCCAGCGAGUUua--GGGggGCg -3'
miRNA:   3'- -GCGGCGGUCGUUCAGcgggCCUuaCG- -5'
6388 3' -58.2 NC_001847.1 + 31347 0.73 0.427139
Target:  5'- cCGCCGCCGGCGGcggaagccccGcCgGCCCGG-GUGCc -3'
miRNA:   3'- -GCGGCGGUCGUU----------CaG-CGGGCCuUACG- -5'
6388 3' -58.2 NC_001847.1 + 63682 0.72 0.433329
Target:  5'- gGCCGCCAuGCccccggAAG-CGCCCGGGgccaaccucgucguGUGCa -3'
miRNA:   3'- gCGGCGGU-CG------UUCaGCGGGCCU--------------UACG- -5'
6388 3' -58.2 NC_001847.1 + 773 0.72 0.435108
Target:  5'- cCGCCGCCGGCGGcgccggccucgucGUCGUCCGacGAG-GCg -3'
miRNA:   3'- -GCGGCGGUCGUU-------------CAGCGGGC--CUUaCG- -5'
6388 3' -58.2 NC_001847.1 + 103586 0.72 0.435108
Target:  5'- cCGCCGCCGGCGGcgccggccucgucGUCGUCCGacGAG-GCg -3'
miRNA:   3'- -GCGGCGGUCGUU-------------CAGCGGGC--CUUaCG- -5'
6388 3' -58.2 NC_001847.1 + 29190 0.72 0.435998
Target:  5'- gCGCCGCCGGCGc--CGCCgGGcucccGGUGCu -3'
miRNA:   3'- -GCGGCGGUCGUucaGCGGgCC-----UUACG- -5'
6388 3' -58.2 NC_001847.1 + 31236 0.72 0.435998
Target:  5'- gCGCCGCCcGCGgccgcGG-CGCCCGGcGUGg -3'
miRNA:   3'- -GCGGCGGuCGU-----UCaGCGGGCCuUACg -5'
6388 3' -58.2 NC_001847.1 + 55164 0.72 0.435998
Target:  5'- cCGCCGCgCAGCGGcUCGCCUGGcAAUa- -3'
miRNA:   3'- -GCGGCG-GUCGUUcAGCGGGCC-UUAcg -5'
6388 3' -58.2 NC_001847.1 + 113960 0.72 0.435998
Target:  5'- aCGCCGCCgGGCGcGUCGCCgCaGAA-GCg -3'
miRNA:   3'- -GCGGCGG-UCGUuCAGCGG-GcCUUaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.