miRNA display CGI


Results 81 - 100 of 519 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6388 3' -58.2 NC_001847.1 + 113960 0.72 0.435998
Target:  5'- aCGCCGCCgGGCGcGUCGCCgCaGAA-GCg -3'
miRNA:   3'- -GCGGCGG-UCGUuCAGCGG-GcCUUaCG- -5'
6388 3' -58.2 NC_001847.1 + 134049 0.72 0.435998
Target:  5'- gCGCCGCCcGCGgccgcGG-CGCCCGGcGUGg -3'
miRNA:   3'- -GCGGCGGuCGU-----UCaGCGGGCCuUACg -5'
6388 3' -58.2 NC_001847.1 + 29190 0.72 0.435998
Target:  5'- gCGCCGCCGGCGc--CGCCgGGcucccGGUGCu -3'
miRNA:   3'- -GCGGCGGUCGUucaGCGGgCC-----UUACG- -5'
6388 3' -58.2 NC_001847.1 + 71401 0.72 0.444963
Target:  5'- gCGCCGCCAgGCGGcgcuGUUGCUCGGccggggggagGGUGCa -3'
miRNA:   3'- -GCGGCGGU-CGUU----CAGCGGGCC----------UUACG- -5'
6388 3' -58.2 NC_001847.1 + 29427 0.72 0.444963
Target:  5'- uGCgCGCCAGCGAG-CGCUgGGGcgugGCg -3'
miRNA:   3'- gCG-GCGGUCGUUCaGCGGgCCUua--CG- -5'
6388 3' -58.2 NC_001847.1 + 69141 0.72 0.444963
Target:  5'- gGCCGCCguGGCG---UGCCCGGcGGUGCa -3'
miRNA:   3'- gCGGCGG--UCGUucaGCGGGCC-UUACG- -5'
6388 3' -58.2 NC_001847.1 + 127286 0.72 0.444963
Target:  5'- gGCCGCCucuGCAGG-CGCcaCCGGcGGUGCc -3'
miRNA:   3'- gCGGCGGu--CGUUCaGCG--GGCC-UUACG- -5'
6388 3' -58.2 NC_001847.1 + 52024 0.72 0.45403
Target:  5'- gGCCGCCGaggaggugcuacGCGAGgcggaggccCGCCCGGAGgUGUg -3'
miRNA:   3'- gCGGCGGU------------CGUUCa--------GCGGGCCUU-ACG- -5'
6388 3' -58.2 NC_001847.1 + 95384 0.72 0.45403
Target:  5'- gCGCCGCCGGCucuGAGgccggCGCCgGGGAc-- -3'
miRNA:   3'- -GCGGCGGUCG---UUCa----GCGGgCCUUacg -5'
6388 3' -58.2 NC_001847.1 + 32127 0.72 0.463196
Target:  5'- cCGCCGCCGGCGcuGGgcgccgccgCGCCCGcgcacgccgcGAcgGCg -3'
miRNA:   3'- -GCGGCGGUCGU--UCa--------GCGGGC----------CUuaCG- -5'
6388 3' -58.2 NC_001847.1 + 15781 0.72 0.463196
Target:  5'- uCGCCGgCGGCAAG-CGCCgcgcggCGGGAgGCg -3'
miRNA:   3'- -GCGGCgGUCGUUCaGCGG------GCCUUaCG- -5'
6388 3' -58.2 NC_001847.1 + 27297 0.72 0.472459
Target:  5'- aGCCGCC-GCcGGUCGCCCGa---GCu -3'
miRNA:   3'- gCGGCGGuCGuUCAGCGGGCcuuaCG- -5'
6388 3' -58.2 NC_001847.1 + 88554 0.72 0.472459
Target:  5'- gGCCgcGCCGGCGGGgcugaCGCCCGGc--GCg -3'
miRNA:   3'- gCGG--CGGUCGUUCa----GCGGGCCuuaCG- -5'
6388 3' -58.2 NC_001847.1 + 4545 0.72 0.472459
Target:  5'- gGCCGCCcGCGGGUgGCgCGGcGUGg -3'
miRNA:   3'- gCGGCGGuCGUUCAgCGgGCCuUACg -5'
6388 3' -58.2 NC_001847.1 + 62562 0.72 0.472459
Target:  5'- uGCCGCCgcGGCcgcGGUUGCUCGGcuuUGCg -3'
miRNA:   3'- gCGGCGG--UCGu--UCAGCGGGCCuu-ACG- -5'
6388 3' -58.2 NC_001847.1 + 130110 0.72 0.472459
Target:  5'- aGCCGCC-GCcGGUCGCCCGa---GCu -3'
miRNA:   3'- gCGGCGGuCGuUCAGCGGGCcuuaCG- -5'
6388 3' -58.2 NC_001847.1 + 81795 0.72 0.472459
Target:  5'- gGCCGCCAGCAGcgcGUCGCUuuccgcugCGGcGUGg -3'
miRNA:   3'- gCGGCGGUCGUU---CAGCGG--------GCCuUACg -5'
6388 3' -58.2 NC_001847.1 + 86351 0.71 0.480874
Target:  5'- uGgCGCCGGCGAGgCGCCCGcagacgaGGcgGCg -3'
miRNA:   3'- gCgGCGGUCGUUCaGCGGGC-------CUuaCG- -5'
6388 3' -58.2 NC_001847.1 + 2286 0.71 0.481814
Target:  5'- cCGCCGUCGGCGgcggGGcCGCC-GGGcgGCa -3'
miRNA:   3'- -GCGGCGGUCGU----UCaGCGGgCCUuaCG- -5'
6388 3' -58.2 NC_001847.1 + 129761 0.71 0.481814
Target:  5'- uGCCGCCGGC----CGCUCGGAccGCc -3'
miRNA:   3'- gCGGCGGUCGuucaGCGGGCCUuaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.