miRNA display CGI


Results 41 - 60 of 519 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6388 3' -58.2 NC_001847.1 + 81691 0.66 0.799582
Target:  5'- uCGCCGCCGuaGAG-CGCCaggcgcgcgcgccggUGGAAgcgGCa -3'
miRNA:   3'- -GCGGCGGUcgUUCaGCGG---------------GCCUUa--CG- -5'
6388 3' -58.2 NC_001847.1 + 34563 0.66 0.796014
Target:  5'- gGCCGCugCAGCGGcGgcagCGCCUGGcg-GCa -3'
miRNA:   3'- gCGGCG--GUCGUU-Ca---GCGGGCCuuaCG- -5'
6388 3' -58.2 NC_001847.1 + 54106 0.66 0.796014
Target:  5'- aCGUCGCCcccgcaguccgcGGCGGcGUCGCCC---AUGCg -3'
miRNA:   3'- -GCGGCGG------------UCGUU-CAGCGGGccuUACG- -5'
6388 3' -58.2 NC_001847.1 + 27419 0.66 0.796014
Target:  5'- uGCCGCCGGCGcggucgguGUCGUUCGcagcgGCg -3'
miRNA:   3'- gCGGCGGUCGUu-------CAGCGGGCcuua-CG- -5'
6388 3' -58.2 NC_001847.1 + 82548 0.66 0.796014
Target:  5'- gCGCCGCCcGCGGGcUCGgCCuCGGcc-GCc -3'
miRNA:   3'- -GCGGCGGuCGUUC-AGC-GG-GCCuuaCG- -5'
6388 3' -58.2 NC_001847.1 + 83742 0.66 0.796014
Target:  5'- gCGCCGCC-GCAAGguUCGgCgCCGcGAccGCg -3'
miRNA:   3'- -GCGGCGGuCGUUC--AGC-G-GGC-CUuaCG- -5'
6388 3' -58.2 NC_001847.1 + 86872 0.66 0.796014
Target:  5'- gGCCGCCGuCGAccuaGCCugCGGggUGCg -3'
miRNA:   3'- gCGGCGGUcGUUcag-CGG--GCCuuACG- -5'
6388 3' -58.2 NC_001847.1 + 97763 0.66 0.796014
Target:  5'- uCGuuGUCAGCGcacCGCCgGGGAUGa -3'
miRNA:   3'- -GCggCGGUCGUucaGCGGgCCUUACg -5'
6388 3' -58.2 NC_001847.1 + 36010 0.66 0.796014
Target:  5'- gGCCGCgGGCGuggUGCUgGGGcUGCg -3'
miRNA:   3'- gCGGCGgUCGUucaGCGGgCCUuACG- -5'
6388 3' -58.2 NC_001847.1 + 16213 0.66 0.796014
Target:  5'- gGCCGUCuGCGaagggcgacGGUauggGCCCGGuAGUGUg -3'
miRNA:   3'- gCGGCGGuCGU---------UCAg---CGGGCC-UUACG- -5'
6388 3' -58.2 NC_001847.1 + 19736 0.66 0.796014
Target:  5'- gGCCGgacgCGGCGGGcCGCUuagcgggaaggCGGggUGCg -3'
miRNA:   3'- gCGGCg---GUCGUUCaGCGG-----------GCCuuACG- -5'
6388 3' -58.2 NC_001847.1 + 34143 0.66 0.796014
Target:  5'- gGCCGCCgcGGCGAGcgCGCUgCGcGAGgcgGCu -3'
miRNA:   3'- gCGGCGG--UCGUUCa-GCGG-GC-CUUa--CG- -5'
6388 3' -58.2 NC_001847.1 + 78670 0.66 0.796014
Target:  5'- gCGUCGCCGGCGug-CGCaCgCGGGcgcugGUGCc -3'
miRNA:   3'- -GCGGCGGUCGUucaGCG-G-GCCU-----UACG- -5'
6388 3' -58.2 NC_001847.1 + 86513 0.66 0.796014
Target:  5'- cCGUCGCgCGGCGgcuGGgCGCCCGc-GUGCu -3'
miRNA:   3'- -GCGGCG-GUCGU---UCaGCGGGCcuUACG- -5'
6388 3' -58.2 NC_001847.1 + 125112 0.66 0.796014
Target:  5'- uCGCgG-CGGCGAGaaGCCCGGAGcccucGCa -3'
miRNA:   3'- -GCGgCgGUCGUUCagCGGGCCUUa----CG- -5'
6388 3' -58.2 NC_001847.1 + 130232 0.66 0.796014
Target:  5'- uGCCGCCGGCGcggucgguGUCGUUCGcagcgGCg -3'
miRNA:   3'- gCGGCGGUCGUu-------CAGCGGGCcuua-CG- -5'
6388 3' -58.2 NC_001847.1 + 43199 0.66 0.795119
Target:  5'- gCGCgCGCCucguggauugcucGGCGccGUUGCCCGGug-GCg -3'
miRNA:   3'- -GCG-GCGG-------------UCGUu-CAGCGGGCCuuaCG- -5'
6388 3' -58.2 NC_001847.1 + 102276 0.66 0.795119
Target:  5'- uCGCCGUCGGCcgccgugAGGUCgauggGCCCGGcGUcGUa -3'
miRNA:   3'- -GCGGCGGUCG-------UUCAG-----CGGGCCuUA-CG- -5'
6388 3' -58.2 NC_001847.1 + 102413 0.66 0.792424
Target:  5'- aGCCGCCGGCcggaggccgaGAGgcgcuccaugaagCGCgCCGaGAcgGCg -3'
miRNA:   3'- gCGGCGGUCG----------UUCa------------GCG-GGC-CUuaCG- -5'
6388 3' -58.2 NC_001847.1 + 106065 0.66 0.786995
Target:  5'- uCGCCGgCGGCAGGggCGCCgGcGccGCg -3'
miRNA:   3'- -GCGGCgGUCGUUCa-GCGGgCcUuaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.