miRNA display CGI


Results 1 - 20 of 519 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6388 3' -58.2 NC_001847.1 + 773 0.72 0.435108
Target:  5'- cCGCCGCCGGCGGcgccggccucgucGUCGUCCGacGAG-GCg -3'
miRNA:   3'- -GCGGCGGUCGUU-------------CAGCGGGC--CUUaCG- -5'
6388 3' -58.2 NC_001847.1 + 917 0.71 0.481814
Target:  5'- cCGCCGCCcGCcGG-CGCCgGGAA-GCc -3'
miRNA:   3'- -GCGGCGGuCGuUCaGCGGgCCUUaCG- -5'
6388 3' -58.2 NC_001847.1 + 1125 0.66 0.786995
Target:  5'- gCGaCGCUGGCGAGacCGCCCGuGAcUGUa -3'
miRNA:   3'- -GCgGCGGUCGUUCa-GCGGGC-CUuACG- -5'
6388 3' -58.2 NC_001847.1 + 1395 0.67 0.749636
Target:  5'- gCGCUGCCGGUAc-UCGCgCGGcg-GCa -3'
miRNA:   3'- -GCGGCGGUCGUucAGCGgGCCuuaCG- -5'
6388 3' -58.2 NC_001847.1 + 1582 0.71 0.491257
Target:  5'- gCGCgCGCCAGCGcGcCGCUCGGGccaGCg -3'
miRNA:   3'- -GCG-GCGGUCGUuCaGCGGGCCUua-CG- -5'
6388 3' -58.2 NC_001847.1 + 1782 0.75 0.315176
Target:  5'- gGcCCGCCAcGCAGGUC-CCgGGGAUGUa -3'
miRNA:   3'- gC-GGCGGU-CGUUCAGcGGgCCUUACG- -5'
6388 3' -58.2 NC_001847.1 + 1948 0.73 0.418386
Target:  5'- gGCCGCCGGCGc-UCGUccucgCCGGGcgGCg -3'
miRNA:   3'- gCGGCGGUCGUucAGCG-----GGCCUuaCG- -5'
6388 3' -58.2 NC_001847.1 + 1976 0.71 0.481814
Target:  5'- nCGCCGCCAGCGccUC-CCCGGca-GCg -3'
miRNA:   3'- -GCGGCGGUCGUucAGcGGGCCuuaCG- -5'
6388 3' -58.2 NC_001847.1 + 2063 0.68 0.680692
Target:  5'- gCGCCGCCgcagcgguggcGGCGAG-CGCCCcgcGGGGcccGCg -3'
miRNA:   3'- -GCGGCGG-----------UCGUUCaGCGGG---CCUUa--CG- -5'
6388 3' -58.2 NC_001847.1 + 2222 0.7 0.563473
Target:  5'- gGCCGCCAGCgccgcggcgcugGgcgcgggcgugugguAGUC-CCCGGGcgGCa -3'
miRNA:   3'- gCGGCGGUCG------------U---------------UCAGcGGGCCUuaCG- -5'
6388 3' -58.2 NC_001847.1 + 2286 0.71 0.481814
Target:  5'- cCGCCGUCGGCGgcggGGcCGCC-GGGcgGCa -3'
miRNA:   3'- -GCGGCGGUCGU----UCaGCGGgCCUuaCG- -5'
6388 3' -58.2 NC_001847.1 + 2590 0.69 0.599673
Target:  5'- gGCCGCCGcggccgcacGCGAGcccgcCGCgCCGGAgGUGCu -3'
miRNA:   3'- gCGGCGGU---------CGUUCa----GCG-GGCCU-UACG- -5'
6388 3' -58.2 NC_001847.1 + 2647 0.71 0.529837
Target:  5'- uCGCCGCUugcGGCGccuUCGCCCGGcg-GCu -3'
miRNA:   3'- -GCGGCGG---UCGUuc-AGCGGGCCuuaCG- -5'
6388 3' -58.2 NC_001847.1 + 2932 0.69 0.609796
Target:  5'- gCGCCGCCAGCGcGGcCGCCuccagCGcGGcgGCc -3'
miRNA:   3'- -GCGGCGGUCGU-UCaGCGG-----GC-CUuaCG- -5'
6388 3' -58.2 NC_001847.1 + 3056 0.67 0.73031
Target:  5'- aGCCGCaggcGCAGGUugUGCUCGuAGUGCa -3'
miRNA:   3'- gCGGCGgu--CGUUCA--GCGGGCcUUACG- -5'
6388 3' -58.2 NC_001847.1 + 3072 0.73 0.392798
Target:  5'- gCGCCGCCAGCg---CGUCCGGcgcGCa -3'
miRNA:   3'- -GCGGCGGUCGuucaGCGGGCCuuaCG- -5'
6388 3' -58.2 NC_001847.1 + 3099 0.66 0.804888
Target:  5'- cCGCgGCCGGCAGGccgCGgCCCGccgcgGCc -3'
miRNA:   3'- -GCGgCGGUCGUUCa--GC-GGGCcuua-CG- -5'
6388 3' -58.2 NC_001847.1 + 3224 0.67 0.75915
Target:  5'- aGCCGCUcGCGcGcCGCCCGcgccGUGCu -3'
miRNA:   3'- gCGGCGGuCGUuCaGCGGGCcu--UACG- -5'
6388 3' -58.2 NC_001847.1 + 3252 0.66 0.786995
Target:  5'- uCGCCGgCGGCAGGggCGCCgGcGccGCg -3'
miRNA:   3'- -GCGGCgGUCGUUCa-GCGGgCcUuaCG- -5'
6388 3' -58.2 NC_001847.1 + 3330 0.67 0.768554
Target:  5'- uGCCGCCGGCGccGGcC-UCCGGGuagGCc -3'
miRNA:   3'- gCGGCGGUCGU--UCaGcGGGCCUua-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.