miRNA display CGI


Results 21 - 40 of 519 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6388 3' -58.2 NC_001847.1 + 3573 0.67 0.73031
Target:  5'- gGCgCGCCAgcuGCAGGUCcggGCCCGcGAGcuucgcgcucUGCa -3'
miRNA:   3'- gCG-GCGGU---CGUUCAG---CGGGC-CUU----------ACG- -5'
6388 3' -58.2 NC_001847.1 + 3668 0.7 0.559483
Target:  5'- aGCCauGCCAGCAGGcCGCCgCGaGccUGCg -3'
miRNA:   3'- gCGG--CGGUCGUUCaGCGG-GC-CuuACG- -5'
6388 3' -58.2 NC_001847.1 + 3750 0.68 0.684712
Target:  5'- gGCCGUgCAGCGcuucGUCGCCgucgagcagcccgggCGGGAUGUg -3'
miRNA:   3'- gCGGCG-GUCGUu---CAGCGG---------------GCCUUACG- -5'
6388 3' -58.2 NC_001847.1 + 3791 0.71 0.529837
Target:  5'- gCGCCGCCgaAGCGcacgCGgCCGGGcgGCg -3'
miRNA:   3'- -GCGGCGG--UCGUuca-GCgGGCCUuaCG- -5'
6388 3' -58.2 NC_001847.1 + 3960 0.68 0.660509
Target:  5'- gCGCCGUCuccggcGGCGAGggCGCCgGGGGccggGCg -3'
miRNA:   3'- -GCGGCGG------UCGUUCa-GCGGgCCUUa---CG- -5'
6388 3' -58.2 NC_001847.1 + 4216 0.7 0.579504
Target:  5'- aCGUCGCCGGCcucGGUCcugGCCCcGAggGCa -3'
miRNA:   3'- -GCGGCGGUCGu--UCAG---CGGGcCUuaCG- -5'
6388 3' -58.2 NC_001847.1 + 4317 0.69 0.640235
Target:  5'- gCGCCGCCuGCGGGUagUGCuCCGccAUGUa -3'
miRNA:   3'- -GCGGCGGuCGUUCA--GCG-GGCcuUACG- -5'
6388 3' -58.2 NC_001847.1 + 4545 0.72 0.472459
Target:  5'- gGCCGCCcGCGGGUgGCgCGGcGUGg -3'
miRNA:   3'- gCGGCGGuCGUUCAgCGgGCCuUACg -5'
6388 3' -58.2 NC_001847.1 + 4842 0.73 0.418386
Target:  5'- gGCCGCCGGCGauaauguauGG-CGCCgGGAcggGCa -3'
miRNA:   3'- gCGGCGGUCGU---------UCaGCGGgCCUua-CG- -5'
6388 3' -58.2 NC_001847.1 + 4966 0.66 0.777839
Target:  5'- gCGCgCGCCGGgGGGgcaGCU-GGggUGCg -3'
miRNA:   3'- -GCG-GCGGUCgUUCag-CGGgCCuuACG- -5'
6388 3' -58.2 NC_001847.1 + 5195 0.71 0.529837
Target:  5'- gCGCCGCgagcgCGGCAAGcgCGCCgcgaCGGAAgcUGCg -3'
miRNA:   3'- -GCGGCG-----GUCGUUCa-GCGG----GCCUU--ACG- -5'
6388 3' -58.2 NC_001847.1 + 5224 0.67 0.768554
Target:  5'- gGCgGCCGGCGGGgcgCGCgCGGcAAaggguuugccUGCg -3'
miRNA:   3'- gCGgCGGUCGUUCa--GCGgGCC-UU----------ACG- -5'
6388 3' -58.2 NC_001847.1 + 5691 0.7 0.559483
Target:  5'- gGCCGCCAGCucaaguAGcCGCuuGGAcaccccGCa -3'
miRNA:   3'- gCGGCGGUCGu-----UCaGCGggCCUua----CG- -5'
6388 3' -58.2 NC_001847.1 + 5694 0.71 0.519109
Target:  5'- gGCCGCCcagacccGGCAguucaGGUgCGCCUGGGAggGCu -3'
miRNA:   3'- gCGGCGG-------UCGU-----UCA-GCGGGCCUUa-CG- -5'
6388 3' -58.2 NC_001847.1 + 5818 0.68 0.710651
Target:  5'- aCGCCcCCGGCcccgCGCCCGGcagGCc -3'
miRNA:   3'- -GCGGcGGUCGuucaGCGGGCCuuaCG- -5'
6388 3' -58.2 NC_001847.1 + 6135 0.7 0.569472
Target:  5'- uCGCCGCCAuCGGGggGCUCGGug-GCg -3'
miRNA:   3'- -GCGGCGGUcGUUCagCGGGCCuuaCG- -5'
6388 3' -58.2 NC_001847.1 + 6510 0.68 0.680692
Target:  5'- gCGUCGCCGGCGcGcUCaGCCUGGAAc-- -3'
miRNA:   3'- -GCGGCGGUCGUuC-AG-CGGGCCUUacg -5'
6388 3' -58.2 NC_001847.1 + 6627 0.68 0.680692
Target:  5'- aGCCGCCGGUAGGcggCGaCCGuuuuGUGCu -3'
miRNA:   3'- gCGGCGGUCGUUCa--GCgGGCcu--UACG- -5'
6388 3' -58.2 NC_001847.1 + 7071 0.68 0.700719
Target:  5'- gGCaCG-CGGCGAGcCGCCCGGGccaguUGUa -3'
miRNA:   3'- gCG-GCgGUCGUUCaGCGGGCCUu----ACG- -5'
6388 3' -58.2 NC_001847.1 + 8611 0.68 0.700719
Target:  5'- aGCCGCagcGCAAGcccCGCCgGGGGaGCg -3'
miRNA:   3'- gCGGCGgu-CGUUCa--GCGGgCCUUaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.