miRNA display CGI


Results 61 - 80 of 519 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6388 3' -58.2 NC_001847.1 + 16213 0.66 0.796014
Target:  5'- gGCCGUCuGCGaagggcgacGGUauggGCCCGGuAGUGUg -3'
miRNA:   3'- gCGGCGGuCGU---------UCAg---CGGGCC-UUACG- -5'
6388 3' -58.2 NC_001847.1 + 16648 0.7 0.558487
Target:  5'- uGCCGUCGGggccccgcgccuaCAGGcgCGCCCGGGccuUGCg -3'
miRNA:   3'- gCGGCGGUC-------------GUUCa-GCGGGCCUu--ACG- -5'
6388 3' -58.2 NC_001847.1 + 16892 0.74 0.368248
Target:  5'- gCGCaCGCCGcGCAGGUUuaccaGCCCGGGccGCu -3'
miRNA:   3'- -GCG-GCGGU-CGUUCAG-----CGGGCCUuaCG- -5'
6388 3' -58.2 NC_001847.1 + 17858 0.74 0.355592
Target:  5'- gCGuuGCCAGCGccgccgGGUCGCCCguccucgggcggggcGGGcgGCg -3'
miRNA:   3'- -GCggCGGUCGU------UCAGCGGG---------------CCUuaCG- -5'
6388 3' -58.2 NC_001847.1 + 18594 0.7 0.589573
Target:  5'- aGUCGCCcaGGCAcacGUCGCCUGGGccGUu -3'
miRNA:   3'- gCGGCGG--UCGUu--CAGCGGGCCUuaCG- -5'
6388 3' -58.2 NC_001847.1 + 18945 0.74 0.368248
Target:  5'- gCGCCGCC-GCGg--CGUCCGGGcgGCg -3'
miRNA:   3'- -GCGGCGGuCGUucaGCGGGCCUuaCG- -5'
6388 3' -58.2 NC_001847.1 + 18996 0.7 0.57348
Target:  5'- gGCCGCCAGCGccucGGgccgcgcgccccagCGCCCGGccgaaagGCc -3'
miRNA:   3'- gCGGCGGUCGU----UCa-------------GCGGGCCuua----CG- -5'
6388 3' -58.2 NC_001847.1 + 19416 0.67 0.720518
Target:  5'- gGCCaCCAGCg---CGCCCGuGGcgGCa -3'
miRNA:   3'- gCGGcGGUCGuucaGCGGGC-CUuaCG- -5'
6388 3' -58.2 NC_001847.1 + 19736 0.66 0.796014
Target:  5'- gGCCGgacgCGGCGGGcCGCUuagcgggaaggCGGggUGCg -3'
miRNA:   3'- gCGGCg---GUCGUUCaGCGG-----------GCCuuACG- -5'
6388 3' -58.2 NC_001847.1 + 20410 0.71 0.520081
Target:  5'- gCGaCCGCCGGCAccGGU--CCCGG-AUGCg -3'
miRNA:   3'- -GC-GGCGGUCGU--UCAgcGGGCCuUACG- -5'
6388 3' -58.2 NC_001847.1 + 21360 0.75 0.294265
Target:  5'- gCGCCGUCGGCGgcucgGGcCGCCuCGGGcgGCu -3'
miRNA:   3'- -GCGGCGGUCGU-----UCaGCGG-GCCUuaCG- -5'
6388 3' -58.2 NC_001847.1 + 21626 0.68 0.670616
Target:  5'- gCGCUugGCCGGCGcGGgccgCGCCCGGGc-GCg -3'
miRNA:   3'- -GCGG--CGGUCGU-UCa---GCGGGCCUuaCG- -5'
6388 3' -58.2 NC_001847.1 + 21766 0.7 0.579504
Target:  5'- gGCCGCCGGCGccggGCCCGGcgccgGCc -3'
miRNA:   3'- gCGGCGGUCGUucagCGGGCCuua--CG- -5'
6388 3' -58.2 NC_001847.1 + 21837 0.67 0.75915
Target:  5'- aGCCGCCAauGCug--CGCUCGG--UGCa -3'
miRNA:   3'- gCGGCGGU--CGuucaGCGGGCCuuACG- -5'
6388 3' -58.2 NC_001847.1 + 22091 0.66 0.813607
Target:  5'- aGCgGgcCCGGCAGG-CGCgCCGGGG-GCg -3'
miRNA:   3'- gCGgC--GGUCGUUCaGCG-GGCCUUaCG- -5'
6388 3' -58.2 NC_001847.1 + 22112 0.67 0.740019
Target:  5'- uGCUGCCGGCGucccAGaCGCgCGGcggcGUGCu -3'
miRNA:   3'- gCGGCGGUCGU----UCaGCGgGCCu---UACG- -5'
6388 3' -58.2 NC_001847.1 + 22370 0.7 0.579504
Target:  5'- gGgCGCCAGUccucggggcagAAGgCGCCCGGGccGCg -3'
miRNA:   3'- gCgGCGGUCG-----------UUCaGCGGGCCUuaCG- -5'
6388 3' -58.2 NC_001847.1 + 22584 0.69 0.650379
Target:  5'- gCGCC-CCggGGCAGGgccCGCCCGGuc-GCg -3'
miRNA:   3'- -GCGGcGG--UCGUUCa--GCGGGCCuuaCG- -5'
6388 3' -58.2 NC_001847.1 + 22623 0.69 0.619936
Target:  5'- aGUgGCCGcGCAGGgcgCGUCCGGGGaggGCg -3'
miRNA:   3'- gCGgCGGU-CGUUCa--GCGGGCCUUa--CG- -5'
6388 3' -58.2 NC_001847.1 + 23041 0.67 0.768554
Target:  5'- gCGCCGCUcgAGCcAGUCcaccuuGCgCCGGAccGCc -3'
miRNA:   3'- -GCGGCGG--UCGuUCAG------CG-GGCCUuaCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.