miRNA display CGI


Results 81 - 100 of 519 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6388 3' -58.2 NC_001847.1 + 23419 0.73 0.418386
Target:  5'- gGUCGUCGGCGGGgCGUCCGGggUcgucgGCg -3'
miRNA:   3'- gCGGCGGUCGUUCaGCGGGCCuuA-----CG- -5'
6388 3' -58.2 NC_001847.1 + 25192 0.67 0.75915
Target:  5'- aGCUgGCCAGCGAGccccgCGCgCGGccgGCa -3'
miRNA:   3'- gCGG-CGGUCGUUCa----GCGgGCCuuaCG- -5'
6388 3' -58.2 NC_001847.1 + 25933 0.69 0.650379
Target:  5'- -cCCGCCGGCGcuuGGUUGCCCGauc-GCa -3'
miRNA:   3'- gcGGCGGUCGU---UCAGCGGGCcuuaCG- -5'
6388 3' -58.2 NC_001847.1 + 25987 0.66 0.813607
Target:  5'- gCGCgGCCGGCucuGGcUC-CCCGGAGa-- -3'
miRNA:   3'- -GCGgCGGUCGu--UC-AGcGGGCCUUacg -5'
6388 3' -58.2 NC_001847.1 + 27124 0.67 0.73031
Target:  5'- gGCCGCCgcGGCGAGagaGCCgGcGAggGCu -3'
miRNA:   3'- gCGGCGG--UCGUUCag-CGGgC-CUuaCG- -5'
6388 3' -58.2 NC_001847.1 + 27297 0.72 0.472459
Target:  5'- aGCCGCC-GCcGGUCGCCCGa---GCu -3'
miRNA:   3'- gCGGCGGuCGuUCAGCGGGCcuuaCG- -5'
6388 3' -58.2 NC_001847.1 + 27382 0.67 0.720518
Target:  5'- gCGCgCGCgaUAGCgAGGUUGCUCGGGGggGCg -3'
miRNA:   3'- -GCG-GCG--GUCG-UUCAGCGGGCCUUa-CG- -5'
6388 3' -58.2 NC_001847.1 + 27410 0.72 0.435998
Target:  5'- -cCCGCCGGCccaaGGGUUGuagcCCCGGggUGCc -3'
miRNA:   3'- gcGGCGGUCG----UUCAGC----GGGCCuuACG- -5'
6388 3' -58.2 NC_001847.1 + 27419 0.66 0.796014
Target:  5'- uGCCGCCGGCGcggucgguGUCGUUCGcagcgGCg -3'
miRNA:   3'- gCGGCGGUCGUu-------CAGCGGGCcuua-CG- -5'
6388 3' -58.2 NC_001847.1 + 27453 0.66 0.804888
Target:  5'- gCGCCGCCAaccGCAGG-CGCCgucacuGAcUGCa -3'
miRNA:   3'- -GCGGCGGU---CGUUCaGCGGgc----CUuACG- -5'
6388 3' -58.2 NC_001847.1 + 27514 0.73 0.427139
Target:  5'- cCGCCGCCgcggcggcGGCGGGgaCGCCCGaGAAcgGCg -3'
miRNA:   3'- -GCGGCGG--------UCGUUCa-GCGGGC-CUUa-CG- -5'
6388 3' -58.2 NC_001847.1 + 27553 0.66 0.777839
Target:  5'- aCGCacccacgGCCGGuCAugucGUCGCCCGGcagGCu -3'
miRNA:   3'- -GCGg------CGGUC-GUu---CAGCGGGCCuuaCG- -5'
6388 3' -58.2 NC_001847.1 + 27702 0.68 0.700719
Target:  5'- gCGCgagCGCCGGCGGGcCGCCCGcgccGAGcugGCc -3'
miRNA:   3'- -GCG---GCGGUCGUUCaGCGGGC----CUUa--CG- -5'
6388 3' -58.2 NC_001847.1 + 28056 0.68 0.700719
Target:  5'- gCGCUGCUGGCGGaaaaccUGCCCGGucugGUGCu -3'
miRNA:   3'- -GCGGCGGUCGUUca----GCGGGCCu---UACG- -5'
6388 3' -58.2 NC_001847.1 + 28336 0.66 0.786995
Target:  5'- cCGgCGCCccGCGGGgccgcgCGCCCGGGcccccgGCg -3'
miRNA:   3'- -GCgGCGGu-CGUUCa-----GCGGGCCUua----CG- -5'
6388 3' -58.2 NC_001847.1 + 28466 0.66 0.813607
Target:  5'- gGCCGCCguGGCAcGacgCGCCgCGGAcgccGCg -3'
miRNA:   3'- gCGGCGG--UCGUuCa--GCGG-GCCUua--CG- -5'
6388 3' -58.2 NC_001847.1 + 28527 0.68 0.660509
Target:  5'- gCGCCGCC-GC----CGCCCGGccgcGUGCg -3'
miRNA:   3'- -GCGGCGGuCGuucaGCGGGCCu---UACG- -5'
6388 3' -58.2 NC_001847.1 + 28621 0.68 0.69073
Target:  5'- uGCCGCCcgaGGCGcuAGU-GCCCGcGggUGa -3'
miRNA:   3'- gCGGCGG---UCGU--UCAgCGGGC-CuuACg -5'
6388 3' -58.2 NC_001847.1 + 28733 0.76 0.287539
Target:  5'- gGCCGCgGGCAGcGUCGCCgCGcGcGUGCg -3'
miRNA:   3'- gCGGCGgUCGUU-CAGCGG-GC-CuUACG- -5'
6388 3' -58.2 NC_001847.1 + 28852 0.66 0.804888
Target:  5'- uGCCGCCGGUcgGGGaCGCCauGGccGCg -3'
miRNA:   3'- gCGGCGGUCG--UUCaGCGGgcCUuaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.