miRNA display CGI


Results 21 - 40 of 519 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6388 3' -58.2 NC_001847.1 + 130366 0.66 0.777839
Target:  5'- aCGCacccacgGCCGGuCAugucGUCGCCCGGcagGCu -3'
miRNA:   3'- -GCGg------CGGUC-GUu---CAGCGGGCCuuaCG- -5'
6388 3' -58.2 NC_001847.1 + 130232 0.66 0.796014
Target:  5'- uGCCGCCGGCGcggucgguGUCGUUCGcagcgGCg -3'
miRNA:   3'- gCGGCGGUCGUu-------CAGCGGGCcuua-CG- -5'
6388 3' -58.2 NC_001847.1 + 130195 0.67 0.720518
Target:  5'- gCGCgCGCgaUAGCgAGGUUGCUCGGGGggGCg -3'
miRNA:   3'- -GCG-GCG--GUCG-UUCAGCGGGCCUUa-CG- -5'
6388 3' -58.2 NC_001847.1 + 130110 0.72 0.472459
Target:  5'- aGCCGCC-GCcGGUCGCCCGa---GCu -3'
miRNA:   3'- gCGGCGGuCGuUCAGCGGGCcuuaCG- -5'
6388 3' -58.2 NC_001847.1 + 129937 0.67 0.73031
Target:  5'- gGCCGCCgcGGCGAGagaGCCgGcGAggGCu -3'
miRNA:   3'- gCGGCGG--UCGUUCag-CGGgC-CUuaCG- -5'
6388 3' -58.2 NC_001847.1 + 129761 0.71 0.481814
Target:  5'- uGCCGCCGGC----CGCUCGGAccGCc -3'
miRNA:   3'- gCGGCGGUCGuucaGCGGGCCUuaCG- -5'
6388 3' -58.2 NC_001847.1 + 129680 0.7 0.569472
Target:  5'- cCGCCGCC-GCAgagAG-CGgCCGGGAcGCg -3'
miRNA:   3'- -GCGGCGGuCGU---UCaGCgGGCCUUaCG- -5'
6388 3' -58.2 NC_001847.1 + 129380 0.68 0.660509
Target:  5'- aCGCCGCgCuucGCGuuGG-CGCgCCGGAcgGCg -3'
miRNA:   3'- -GCGGCG-Gu--CGU--UCaGCG-GGCCUuaCG- -5'
6388 3' -58.2 NC_001847.1 + 128655 0.69 0.650379
Target:  5'- aCGCCGCUAccuacgaccuGCAGGcCGUgCGGGAcUGCc -3'
miRNA:   3'- -GCGGCGGU----------CGUUCaGCGgGCCUU-ACG- -5'
6388 3' -58.2 NC_001847.1 + 128190 0.67 0.749636
Target:  5'- gCGCCGCC-GCGAccccgCGCCUGGcccgucuucguGUGCa -3'
miRNA:   3'- -GCGGCGGuCGUUca---GCGGGCCu----------UACG- -5'
6388 3' -58.2 NC_001847.1 + 127496 0.68 0.660509
Target:  5'- gGCCGCCAuGCGGaUgGCCUGGuccaccAUGCu -3'
miRNA:   3'- gCGGCGGU-CGUUcAgCGGGCCu-----UACG- -5'
6388 3' -58.2 NC_001847.1 + 127411 0.66 0.804888
Target:  5'- cCGCCGCCuccGCGcccgCGCCCugcgccuGAAUGCc -3'
miRNA:   3'- -GCGGCGGu--CGUuca-GCGGGc------CUUACG- -5'
6388 3' -58.2 NC_001847.1 + 127286 0.72 0.444963
Target:  5'- gGCCGCCucuGCAGG-CGCcaCCGGcGGUGCc -3'
miRNA:   3'- gCGGCGGu--CGUUCaGCG--GGCC-UUACG- -5'
6388 3' -58.2 NC_001847.1 + 126453 0.68 0.69073
Target:  5'- gGCCGUCGGCAucGUCGaCUCGGGc--- -3'
miRNA:   3'- gCGGCGGUCGUu-CAGC-GGGCCUuacg -5'
6388 3' -58.2 NC_001847.1 + 126232 0.73 0.418386
Target:  5'- gGUCGUCGGCGGGgCGUCCGGggUcgucgGCg -3'
miRNA:   3'- gCGGCGGUCGUUCaGCGGGCCuuA-----CG- -5'
6388 3' -58.2 NC_001847.1 + 125840 0.67 0.738085
Target:  5'- gGCCGagugcgaaaaaGGCAgcGGUCGCCgGGAccGCg -3'
miRNA:   3'- gCGGCgg---------UCGU--UCAGCGGgCCUuaCG- -5'
6388 3' -58.2 NC_001847.1 + 125482 0.67 0.749636
Target:  5'- uCGCgGCgGGCGcgaGGaCGCCCGGc-UGCu -3'
miRNA:   3'- -GCGgCGgUCGU---UCaGCGGGCCuuACG- -5'
6388 3' -58.2 NC_001847.1 + 125436 0.69 0.619936
Target:  5'- aGUgGCCGcGCAGGgcgCGUCCGGGGaggGCg -3'
miRNA:   3'- gCGgCGGU-CGUUCa--GCGGGCCUUa--CG- -5'
6388 3' -58.2 NC_001847.1 + 125397 0.69 0.650379
Target:  5'- gCGCC-CCggGGCAGGgccCGCCCGGuc-GCg -3'
miRNA:   3'- -GCGGcGG--UCGUUCa--GCGGGCCuuaCG- -5'
6388 3' -58.2 NC_001847.1 + 125183 0.7 0.579504
Target:  5'- gGgCGCCAGUccucggggcagAAGgCGCCCGGGccGCg -3'
miRNA:   3'- gCgGCGGUCG-----------UUCaGCGGGCCUuaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.