miRNA display CGI


Results 61 - 80 of 519 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6388 3' -58.2 NC_001847.1 + 117261 0.67 0.75915
Target:  5'- cCGCCGCCcGCcc--CGCCCGaGGAcggGCg -3'
miRNA:   3'- -GCGGCGGuCGuucaGCGGGC-CUUa--CG- -5'
6388 3' -58.2 NC_001847.1 + 116934 0.67 0.749636
Target:  5'- aGCCGCaCAGCccGUaccgcUGCCUGGcGGUGCu -3'
miRNA:   3'- gCGGCG-GUCGuuCA-----GCGGGCC-UUACG- -5'
6388 3' -58.2 NC_001847.1 + 116654 0.66 0.804888
Target:  5'- aGCCGCgGGCAcgcuGGUgGCCUGc-GUGUg -3'
miRNA:   3'- gCGGCGgUCGU----UCAgCGGGCcuUACG- -5'
6388 3' -58.2 NC_001847.1 + 116277 0.69 0.609796
Target:  5'- gCGCCGCuCGGCGAGgcagcgUGCCCcgcuGAcccGUGCg -3'
miRNA:   3'- -GCGGCG-GUCGUUCa-----GCGGGc---CU---UACG- -5'
6388 3' -58.2 NC_001847.1 + 115886 0.69 0.599673
Target:  5'- gCGCCGCCGGCucgcGcCGCuuGGccgGCu -3'
miRNA:   3'- -GCGGCGGUCGuu--CaGCGggCCuuaCG- -5'
6388 3' -58.2 NC_001847.1 + 115881 0.67 0.73031
Target:  5'- gCGCCGCCGGCcagaaccGGUC-CgCCGGAc-GCg -3'
miRNA:   3'- -GCGGCGGUCGu------UCAGcG-GGCCUuaCG- -5'
6388 3' -58.2 NC_001847.1 + 115120 0.66 0.804888
Target:  5'- gGCgGCC-GCAGGgcCGCCCuauuGGaAGUGCg -3'
miRNA:   3'- gCGgCGGuCGUUCa-GCGGG----CC-UUACG- -5'
6388 3' -58.2 NC_001847.1 + 113960 0.72 0.435998
Target:  5'- aCGCCGCCgGGCGcGUCGCCgCaGAA-GCg -3'
miRNA:   3'- -GCGGCGG-UCGUuCAGCGG-GcCUUaCG- -5'
6388 3' -58.2 NC_001847.1 + 113539 0.73 0.427139
Target:  5'- gCGCCGCCAGCGAGUUua--GGGggGCg -3'
miRNA:   3'- -GCGGCGGUCGUUCAGcgggCCUuaCG- -5'
6388 3' -58.2 NC_001847.1 + 113483 0.68 0.680692
Target:  5'- cCGUCGCCGGgGGGcUCGCCCuccGGuc-GCg -3'
miRNA:   3'- -GCGGCGGUCgUUC-AGCGGG---CCuuaCG- -5'
6388 3' -58.2 NC_001847.1 + 113135 0.69 0.623995
Target:  5'- gGUCGCCGGCGucguaguuuucagcgGGUCGUCgaccgCGGGcgGCa -3'
miRNA:   3'- gCGGCGGUCGU---------------UCAGCGG-----GCCUuaCG- -5'
6388 3' -58.2 NC_001847.1 + 113019 0.69 0.609796
Target:  5'- cCGCCGCCGGgccCAGGgcgCGCCCGcuGUcGCc -3'
miRNA:   3'- -GCGGCGGUC---GUUCa--GCGGGCcuUA-CG- -5'
6388 3' -58.2 NC_001847.1 + 111353 0.67 0.740019
Target:  5'- gGCCGCCGcGCuGGgcgaccucgCGCCCGGGcauccGCu -3'
miRNA:   3'- gCGGCGGU-CGuUCa--------GCGGGCCUua---CG- -5'
6388 3' -58.2 NC_001847.1 + 111076 0.68 0.710651
Target:  5'- uGCCGCgGGCcuGg-GCCCGGc-UGCg -3'
miRNA:   3'- gCGGCGgUCGuuCagCGGGCCuuACG- -5'
6388 3' -58.2 NC_001847.1 + 110250 0.69 0.649365
Target:  5'- gCGCgGCCuGC---UCGCCCGGGAcgagucgacgcgcUGCg -3'
miRNA:   3'- -GCGgCGGuCGuucAGCGGGCCUU-------------ACG- -5'
6388 3' -58.2 NC_001847.1 + 109841 0.69 0.630084
Target:  5'- gCGCCcucGUCGGCGAGggCGCCaCGuGGUGCg -3'
miRNA:   3'- -GCGG---CGGUCGUUCa-GCGG-GCcUUACG- -5'
6388 3' -58.2 NC_001847.1 + 108814 0.67 0.720518
Target:  5'- aCGCCGCCuucGCg---CGCCUGGGGacgcUGCc -3'
miRNA:   3'- -GCGGCGGu--CGuucaGCGGGCCUU----ACG- -5'
6388 3' -58.2 NC_001847.1 + 108631 0.68 0.710651
Target:  5'- aCGCCcCCGGCcccgCGCCCGGcagGCc -3'
miRNA:   3'- -GCGGcGGUCGuucaGCGGGCCuuaCG- -5'
6388 3' -58.2 NC_001847.1 + 108507 0.71 0.519109
Target:  5'- gGCCGCCcagacccGGCAguucaGGUgCGCCUGGGAggGCu -3'
miRNA:   3'- gCGGCGG-------UCGU-----UCA-GCGGGCCUUa-CG- -5'
6388 3' -58.2 NC_001847.1 + 108062 0.74 0.375501
Target:  5'- aCGCCuCCAGCGugggcgcGGUgcCGCCCGGGggGCu -3'
miRNA:   3'- -GCGGcGGUCGU-------UCA--GCGGGCCUuaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.