miRNA display CGI


Results 1 - 20 of 519 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6388 3' -58.2 NC_001847.1 + 33003 0.8 0.144925
Target:  5'- gCGCCGCCGu--GGUCGCgCGGAGUGCc -3'
miRNA:   3'- -GCGGCGGUcguUCAGCGgGCCUUACG- -5'
6388 3' -58.2 NC_001847.1 + 87326 0.74 0.360302
Target:  5'- gGCCGCCGGCAucccGUC-CCCGGugucgGCc -3'
miRNA:   3'- gCGGCGGUCGUu---CAGcGGGCCuua--CG- -5'
6388 3' -58.2 NC_001847.1 + 16892 0.74 0.368248
Target:  5'- gCGCaCGCCGcGCAGGUUuaccaGCCCGGGccGCu -3'
miRNA:   3'- -GCG-GCGGU-CGUUCAG-----CGGGCCUuaCG- -5'
6388 3' -58.2 NC_001847.1 + 64003 0.66 0.813607
Target:  5'- uGCCGCgAGCucua--CCCGGGcgGCg -3'
miRNA:   3'- gCGGCGgUCGuucagcGGGCCUuaCG- -5'
6388 3' -58.2 NC_001847.1 + 131904 0.77 0.243824
Target:  5'- uGCCGCCGGCGAGcacgGCgCGGGcgGCg -3'
miRNA:   3'- gCGGCGGUCGUUCag--CGgGCCUuaCG- -5'
6388 3' -58.2 NC_001847.1 + 43001 0.76 0.25572
Target:  5'- aCGCCGCCGGgGGGgCGCgCCGGGccGCc -3'
miRNA:   3'- -GCGGCGGUCgUUCaGCG-GGCCUuaCG- -5'
6388 3' -58.2 NC_001847.1 + 28733 0.76 0.287539
Target:  5'- gGCCGCgGGCAGcGUCGCCgCGcGcGUGCg -3'
miRNA:   3'- gCGGCGgUCGUU-CAGCGG-GC-CuUACG- -5'
6388 3' -58.2 NC_001847.1 + 52083 0.76 0.287539
Target:  5'- uCGCCGCCAGCAAccucGUgCGCUCGGucaugGCc -3'
miRNA:   3'- -GCGGCGGUCGUU----CA-GCGGGCCuua--CG- -5'
6388 3' -58.2 NC_001847.1 + 1782 0.75 0.315176
Target:  5'- gGcCCGCCAcGCAGGUC-CCgGGGAUGUa -3'
miRNA:   3'- gC-GGCGGU-CGUUCAGcGGgCCUUACG- -5'
6388 3' -58.2 NC_001847.1 + 99195 0.74 0.360302
Target:  5'- gCGCCGCCAGCAg--CGCCCaGGc--GCa -3'
miRNA:   3'- -GCGGCGGUCGUucaGCGGG-CCuuaCG- -5'
6388 3' -58.2 NC_001847.1 + 31877 0.74 0.33719
Target:  5'- uGCUGCCGGCGGagcccGUCGCgCGG-AUGCc -3'
miRNA:   3'- gCGGCGGUCGUU-----CAGCGgGCCuUACG- -5'
6388 3' -58.2 NC_001847.1 + 85101 0.75 0.299046
Target:  5'- gGCCGCCGGcCAGGUugaucaucacggcgCGCCCGGGGcccaGCa -3'
miRNA:   3'- gCGGCGGUC-GUUCA--------------GCGGGCCUUa---CG- -5'
6388 3' -58.2 NC_001847.1 + 56064 0.8 0.152488
Target:  5'- gCGCCGCUgaagccugcgcGGCuGAGcgCGCCCGGggUGCg -3'
miRNA:   3'- -GCGGCGG-----------UCG-UUCa-GCGGGCCuuACG- -5'
6388 3' -58.2 NC_001847.1 + 62101 0.74 0.352476
Target:  5'- uGCuuCGCCAGCAGGUUGUCCGcGGccGCu -3'
miRNA:   3'- gCG--GCGGUCGUUCAGCGGGC-CUuaCG- -5'
6388 3' -58.2 NC_001847.1 + 68889 0.78 0.195893
Target:  5'- uCGCCGCgAGCAuGcUCgGCCCGGAgaGUGCa -3'
miRNA:   3'- -GCGGCGgUCGUuC-AG-CGGGCCU--UACG- -5'
6388 3' -58.2 NC_001847.1 + 21360 0.75 0.294265
Target:  5'- gCGCCGUCGGCGgcucgGGcCGCCuCGGGcgGCu -3'
miRNA:   3'- -GCGGCGGUCGU-----UCaGCGG-GCCUuaCG- -5'
6388 3' -58.2 NC_001847.1 + 17858 0.74 0.355592
Target:  5'- gCGuuGCCAGCGccgccgGGUCGCCCguccucgggcggggcGGGcgGCg -3'
miRNA:   3'- -GCggCGGUCGU------UCAGCGGG---------------CCUuaCG- -5'
6388 3' -58.2 NC_001847.1 + 31230 0.74 0.360302
Target:  5'- gGCgCGCgaaAGCGGGgcgCGCCCGGAaauGUGCu -3'
miRNA:   3'- gCG-GCGg--UCGUUCa--GCGGGCCU---UACG- -5'
6388 3' -58.2 NC_001847.1 + 76925 0.77 0.238051
Target:  5'- uGCCGcCCGGCGGGcagaucCGCCCGGAGcGCc -3'
miRNA:   3'- gCGGC-GGUCGUUCa-----GCGGGCCUUaCG- -5'
6388 3' -58.2 NC_001847.1 + 40971 0.76 0.274451
Target:  5'- uGCCGaCgAGCAGGUUGCgCCGGGccGCg -3'
miRNA:   3'- gCGGC-GgUCGUUCAGCG-GGCCUuaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.