Results 21 - 40 of 519 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6388 | 3' | -58.2 | NC_001847.1 | + | 75397 | 0.73 | 0.384497 |
Target: 5'- aCGCgGCCAGCGAGUCGagcucgcgCCGGAc-GCc -3' miRNA: 3'- -GCGgCGGUCGUUCAGCg-------GGCCUuaCG- -5' |
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6388 | 3' | -58.2 | NC_001847.1 | + | 16892 | 0.74 | 0.368248 |
Target: 5'- gCGCaCGCCGcGCAGGUUuaccaGCCCGGGccGCu -3' miRNA: 3'- -GCG-GCGGU-CGUUCAG-----CGGGCCUuaCG- -5' |
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6388 | 3' | -58.2 | NC_001847.1 | + | 85101 | 0.75 | 0.299046 |
Target: 5'- gGCCGCCGGcCAGGUugaucaucacggcgCGCCCGGGGcccaGCa -3' miRNA: 3'- gCGGCGGUC-GUUCA--------------GCGGGCCUUa---CG- -5' |
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6388 | 3' | -58.2 | NC_001847.1 | + | 76925 | 0.77 | 0.238051 |
Target: 5'- uGCCGcCCGGCGGGcagaucCGCCCGGAGcGCc -3' miRNA: 3'- gCGGC-GGUCGUUCa-----GCGGGCCUUaCG- -5' |
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6388 | 3' | -58.2 | NC_001847.1 | + | 134160 | 0.73 | 0.427139 |
Target: 5'- cCGCCGCCGGCGGcggaagccccGcCgGCCCGG-GUGCc -3' miRNA: 3'- -GCGGCGGUCGUU----------CaG-CGGGCCuUACG- -5' |
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6388 | 3' | -58.2 | NC_001847.1 | + | 62485 | 0.73 | 0.392798 |
Target: 5'- gGUCGCCGGCGGG-CgGCCgCGGggUGg -3' miRNA: 3'- gCGGCGGUCGUUCaG-CGG-GCCuuACg -5' |
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6388 | 3' | -58.2 | NC_001847.1 | + | 87326 | 0.74 | 0.360302 |
Target: 5'- gGCCGCCGGCAucccGUC-CCCGGugucgGCc -3' miRNA: 3'- gCGGCGGUCGUu---CAGcGGGCCuua--CG- -5' |
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6388 | 3' | -58.2 | NC_001847.1 | + | 68889 | 0.78 | 0.195893 |
Target: 5'- uCGCCGCgAGCAuGcUCgGCCCGGAgaGUGCa -3' miRNA: 3'- -GCGGCGgUCGUuC-AG-CGGGCCU--UACG- -5' |
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6388 | 3' | -58.2 | NC_001847.1 | + | 105885 | 0.73 | 0.392798 |
Target: 5'- gCGCCGCCAGCg---CGUCCGGcgcGCa -3' miRNA: 3'- -GCGGCGGUCGuucaGCGGGCCuuaCG- -5' |
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6388 | 3' | -58.2 | NC_001847.1 | + | 56064 | 0.8 | 0.152488 |
Target: 5'- gCGCCGCUgaagccugcgcGGCuGAGcgCGCCCGGggUGCg -3' miRNA: 3'- -GCGGCGG-----------UCG-UUCa-GCGGGCCuuACG- -5' |
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6388 | 3' | -58.2 | NC_001847.1 | + | 31230 | 0.74 | 0.360302 |
Target: 5'- gGCgCGCgaaAGCGGGgcgCGCCCGGAaauGUGCu -3' miRNA: 3'- gCG-GCGg--UCGUUCa--GCGGGCCU---UACG- -5' |
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6388 | 3' | -58.2 | NC_001847.1 | + | 119914 | 0.73 | 0.384497 |
Target: 5'- cCGCCGCCGGCGcGUacuucgucuauaCGCgCCGGcgcGGUGCg -3' miRNA: 3'- -GCGGCGGUCGUuCA------------GCG-GGCC---UUACG- -5' |
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6388 | 3' | -58.2 | NC_001847.1 | + | 62101 | 0.74 | 0.352476 |
Target: 5'- uGCuuCGCCAGCAGGUUGUCCGcGGccGCu -3' miRNA: 3'- gCG--GCGGUCGUUCAGCGGGC-CUuaCG- -5' |
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6388 | 3' | -58.2 | NC_001847.1 | + | 1782 | 0.75 | 0.315176 |
Target: 5'- gGcCCGCCAcGCAGGUC-CCgGGGAUGUa -3' miRNA: 3'- gC-GGCGGU-CGUUCAGcGGgCCUUACG- -5' |
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6388 | 3' | -58.2 | NC_001847.1 | + | 28733 | 0.76 | 0.287539 |
Target: 5'- gGCCGCgGGCAGcGUCGCCgCGcGcGUGCg -3' miRNA: 3'- gCGGCGgUCGUU-CAGCGG-GC-CuUACG- -5' |
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6388 | 3' | -58.2 | NC_001847.1 | + | 131904 | 0.77 | 0.243824 |
Target: 5'- uGCCGCCGGCGAGcacgGCgCGGGcgGCg -3' miRNA: 3'- gCGGCGGUCGUUCag--CGgGCCUuaCG- -5' |
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6388 | 3' | -58.2 | NC_001847.1 | + | 132003 | 0.72 | 0.435998 |
Target: 5'- gCGCCGCCGGCGc--CGCCgGGcucccGGUGCu -3' miRNA: 3'- -GCGGCGGUCGUucaGCGGgCC-----UUACG- -5' |
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6388 | 3' | -58.2 | NC_001847.1 | + | 63682 | 0.72 | 0.433329 |
Target: 5'- gGCCGCCAuGCccccggAAG-CGCCCGGGgccaaccucgucguGUGCa -3' miRNA: 3'- gCGGCGGU-CG------UUCaGCGGGCCU--------------UACG- -5' |
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6388 | 3' | -58.2 | NC_001847.1 | + | 33887 | 0.73 | 0.418386 |
Target: 5'- gCGCCGCC-GCGcGUgGCCgCGGGcGUGCa -3' miRNA: 3'- -GCGGCGGuCGUuCAgCGG-GCCU-UACG- -5' |
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6388 | 3' | -58.2 | NC_001847.1 | + | 132373 | 0.73 | 0.401214 |
Target: 5'- gGCCGCCGGCGGGg-GCgCCGGcgccgGCg -3' miRNA: 3'- gCGGCGGUCGUUCagCG-GGCCuua--CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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