miRNA display CGI


Results 61 - 80 of 519 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6388 3' -58.2 NC_001847.1 + 63682 0.72 0.433329
Target:  5'- gGCCGCCAuGCccccggAAG-CGCCCGGGgccaaccucgucguGUGCa -3'
miRNA:   3'- gCGGCGGU-CG------UUCaGCGGGCCU--------------UACG- -5'
6388 3' -58.2 NC_001847.1 + 27410 0.72 0.435998
Target:  5'- -cCCGCCGGCccaaGGGUUGuagcCCCGGggUGCc -3'
miRNA:   3'- gcGGCGGUCG----UUCAGC----GGGCCuuACG- -5'
6388 3' -58.2 NC_001847.1 + 43001 0.76 0.25572
Target:  5'- aCGCCGCCGGgGGGgCGCgCCGGGccGCc -3'
miRNA:   3'- -GCGGCGGUCgUUCaGCG-GGCCUuaCG- -5'
6388 3' -58.2 NC_001847.1 + 52083 0.76 0.287539
Target:  5'- uCGCCGCCAGCAAccucGUgCGCUCGGucaugGCc -3'
miRNA:   3'- -GCGGCGGUCGUU----CA-GCGGGCCuua--CG- -5'
6388 3' -58.2 NC_001847.1 + 30414 0.75 0.332698
Target:  5'- gGCCGCCGGCAAGcUCguggcgggcgcggagGCgCCGGGGcUGCa -3'
miRNA:   3'- gCGGCGGUCGUUC-AG---------------CG-GGCCUU-ACG- -5'
6388 3' -58.2 NC_001847.1 + 17858 0.74 0.355592
Target:  5'- gCGuuGCCAGCGccgccgGGUCGCCCguccucgggcggggcGGGcgGCg -3'
miRNA:   3'- -GCggCGGUCGU------UCAGCGGG---------------CCUuaCG- -5'
6388 3' -58.2 NC_001847.1 + 18945 0.74 0.368248
Target:  5'- gCGCCGCC-GCGg--CGUCCGGGcgGCg -3'
miRNA:   3'- -GCGGCGGuCGUucaGCGGGCCUuaCG- -5'
6388 3' -58.2 NC_001847.1 + 119914 0.73 0.384497
Target:  5'- cCGCCGCCGGCGcGUacuucgucuauaCGCgCCGGcgcGGUGCg -3'
miRNA:   3'- -GCGGCGGUCGUuCA------------GCG-GGCC---UUACG- -5'
6388 3' -58.2 NC_001847.1 + 62485 0.73 0.392798
Target:  5'- gGUCGCCGGCGGG-CgGCCgCGGggUGg -3'
miRNA:   3'- gCGGCGGUCGUUCaG-CGG-GCCuuACg -5'
6388 3' -58.2 NC_001847.1 + 4842 0.73 0.418386
Target:  5'- gGCCGCCGGCGauaauguauGG-CGCCgGGAcggGCa -3'
miRNA:   3'- gCGGCGGUCGU---------UCaGCGGgCCUua-CG- -5'
6388 3' -58.2 NC_001847.1 + 18996 0.7 0.57348
Target:  5'- gGCCGCCAGCGccucGGgccgcgcgccccagCGCCCGGccgaaagGCc -3'
miRNA:   3'- gCGGCGGUCGU----UCa-------------GCGGGCCuua----CG- -5'
6388 3' -58.2 NC_001847.1 + 68974 0.7 0.569472
Target:  5'- gGCgGCCGGCGcca-GCCCGGGAgacaGCg -3'
miRNA:   3'- gCGgCGGUCGUucagCGGGCCUUa---CG- -5'
6388 3' -58.2 NC_001847.1 + 15781 0.72 0.463196
Target:  5'- uCGCCGgCGGCAAG-CGCCgcgcggCGGGAgGCg -3'
miRNA:   3'- -GCGGCgGUCGUUCaGCGG------GCCUUaCG- -5'
6388 3' -58.2 NC_001847.1 + 62562 0.72 0.472459
Target:  5'- uGCCGCCgcGGCcgcGGUUGCUCGGcuuUGCg -3'
miRNA:   3'- gCGGCGG--UCGu--UCAGCGGGCCuu-ACG- -5'
6388 3' -58.2 NC_001847.1 + 83027 0.71 0.500786
Target:  5'- gCGCCGCCGGCccgcggccgcuAGUgCGCuuGGGccGCg -3'
miRNA:   3'- -GCGGCGGUCGu----------UCA-GCGggCCUuaCG- -5'
6388 3' -58.2 NC_001847.1 + 43246 0.71 0.510396
Target:  5'- gGCgCGCgGGCGgcgcGG-CGCCCGGGggGCa -3'
miRNA:   3'- gCG-GCGgUCGU----UCaGCGGGCCUuaCG- -5'
6388 3' -58.2 NC_001847.1 + 99771 0.71 0.520081
Target:  5'- aGCCGCCgcggcuuugGGCGGGgggcagCGCCUGuGGUGCg -3'
miRNA:   3'- gCGGCGG---------UCGUUCa-----GCGGGCcUUACG- -5'
6388 3' -58.2 NC_001847.1 + 5195 0.71 0.529837
Target:  5'- gCGCCGCgagcgCGGCAAGcgCGCCgcgaCGGAAgcUGCg -3'
miRNA:   3'- -GCGGCG-----GUCGUUCa-GCGG----GCCUU--ACG- -5'
6388 3' -58.2 NC_001847.1 + 78284 0.7 0.53966
Target:  5'- uGCuCGCCucuGCGAGgcggUGCUCGGGcgGCu -3'
miRNA:   3'- gCG-GCGGu--CGUUCa---GCGGGCCUuaCG- -5'
6388 3' -58.2 NC_001847.1 + 5691 0.7 0.559483
Target:  5'- gGCCGCCAGCucaaguAGcCGCuuGGAcaccccGCa -3'
miRNA:   3'- gCGGCGGUCGu-----UCaGCGggCCUua----CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.