miRNA display CGI


Results 81 - 100 of 519 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6388 3' -58.2 NC_001847.1 + 4545 0.72 0.472459
Target:  5'- gGCCGCCcGCGGGUgGCgCGGcGUGg -3'
miRNA:   3'- gCGGCGGuCGUUCAgCGgGCCuUACg -5'
6388 3' -58.2 NC_001847.1 + 105099 0.71 0.481814
Target:  5'- cCGCCGUCGGCGgcggGGcCGCC-GGGcgGCa -3'
miRNA:   3'- -GCGGCGGUCGU----UCaGCGGgCCUuaCG- -5'
6388 3' -58.2 NC_001847.1 + 104761 0.71 0.500786
Target:  5'- gGCCGCCGGCGc-UCGUccucgCCGGGcgGCc -3'
miRNA:   3'- gCGGCGGUCGUucAGCG-----GGCCUuaCG- -5'
6388 3' -58.2 NC_001847.1 + 108507 0.71 0.519109
Target:  5'- gGCCGCCcagacccGGCAguucaGGUgCGCCUGGGAggGCu -3'
miRNA:   3'- gCGGCGG-------UCGU-----UCA-GCGGGCCUUa-CG- -5'
6388 3' -58.2 NC_001847.1 + 52522 0.71 0.529837
Target:  5'- gGCCGCgCGGCccgggggauGGUCGCC-GGAggGCg -3'
miRNA:   3'- gCGGCG-GUCGu--------UCAGCGGgCCUuaCG- -5'
6388 3' -58.2 NC_001847.1 + 78284 0.7 0.53966
Target:  5'- uGCuCGCCucuGCGAGgcggUGCUCGGGcgGCu -3'
miRNA:   3'- gCG-GCGGu--CGUUCa---GCGGGCCUuaCG- -5'
6388 3' -58.2 NC_001847.1 + 5691 0.7 0.559483
Target:  5'- gGCCGCCAGCucaaguAGcCGCuuGGAcaccccGCa -3'
miRNA:   3'- gCGGCGGUCGu-----UCaGCGggCCUua----CG- -5'
6388 3' -58.2 NC_001847.1 + 4842 0.73 0.418386
Target:  5'- gGCCGCCGGCGauaauguauGG-CGCCgGGAcggGCa -3'
miRNA:   3'- gCGGCGGUCGU---------UCaGCGGgCCUua-CG- -5'
6388 3' -58.2 NC_001847.1 + 62485 0.73 0.392798
Target:  5'- gGUCGCCGGCGGG-CgGCCgCGGggUGg -3'
miRNA:   3'- gCGGCGGUCGUUCaG-CGG-GCCuuACg -5'
6388 3' -58.2 NC_001847.1 + 119914 0.73 0.384497
Target:  5'- cCGCCGCCGGCGcGUacuucgucuauaCGCgCCGGcgcGGUGCg -3'
miRNA:   3'- -GCGGCGGUCGUuCA------------GCG-GGCC---UUACG- -5'
6388 3' -58.2 NC_001847.1 + 9910 0.7 0.579504
Target:  5'- uCGUgGCCGcCGAGUaCGCCCGGcagGCg -3'
miRNA:   3'- -GCGgCGGUcGUUCA-GCGGGCCuuaCG- -5'
6388 3' -58.2 NC_001847.1 + 41634 0.69 0.599673
Target:  5'- gGCCGCgAGCGg--CGCgCCGGGggGCc -3'
miRNA:   3'- gCGGCGgUCGUucaGCG-GGCCUuaCG- -5'
6388 3' -58.2 NC_001847.1 + 29978 0.69 0.60372
Target:  5'- aCGCCGCCuucgcgcggcugcagGGCuauGUCGCCgagaCGGAA-GCg -3'
miRNA:   3'- -GCGGCGG---------------UCGuu-CAGCGG----GCCUUaCG- -5'
6388 3' -58.2 NC_001847.1 + 63548 0.69 0.609796
Target:  5'- gCGCCGCCugGGCcGG-CGCC-GGGcgGCa -3'
miRNA:   3'- -GCGGCGG--UCGuUCaGCGGgCCUuaCG- -5'
6388 3' -58.2 NC_001847.1 + 125436 0.69 0.619936
Target:  5'- aGUgGCCGcGCAGGgcgCGUCCGGGGaggGCg -3'
miRNA:   3'- gCGgCGGU-CGUUCa--GCGGGCCUUa--CG- -5'
6388 3' -58.2 NC_001847.1 + 43001 0.76 0.25572
Target:  5'- aCGCCGCCGGgGGGgCGCgCCGGGccGCc -3'
miRNA:   3'- -GCGGCGGUCgUUCaGCG-GGCCUuaCG- -5'
6388 3' -58.2 NC_001847.1 + 52083 0.76 0.287539
Target:  5'- uCGCCGCCAGCAAccucGUgCGCUCGGucaugGCc -3'
miRNA:   3'- -GCGGCGGUCGUU----CA-GCGGGCCuua--CG- -5'
6388 3' -58.2 NC_001847.1 + 30414 0.75 0.332698
Target:  5'- gGCCGCCGGCAAGcUCguggcgggcgcggagGCgCCGGGGcUGCa -3'
miRNA:   3'- gCGGCGGUCGUUC-AG---------------CG-GGCCUU-ACG- -5'
6388 3' -58.2 NC_001847.1 + 17858 0.74 0.355592
Target:  5'- gCGuuGCCAGCGccgccgGGUCGCCCguccucgggcggggcGGGcgGCg -3'
miRNA:   3'- -GCggCGGUCGU------UCAGCGGG---------------CCUuaCG- -5'
6388 3' -58.2 NC_001847.1 + 18945 0.74 0.368248
Target:  5'- gCGCCGCC-GCGg--CGUCCGGGcgGCg -3'
miRNA:   3'- -GCGGCGGuCGUucaGCGGGCCUuaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.