Results 1 - 20 of 519 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6388 | 3' | -58.2 | NC_001847.1 | + | 53797 | 0.66 | 0.804007 |
Target: 5'- cCGCCGCgAGgAGGUCugcgcccccuggcGCgCCGGAGcggggGCg -3' miRNA: 3'- -GCGGCGgUCgUUCAG-------------CG-GGCCUUa----CG- -5' |
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6388 | 3' | -58.2 | NC_001847.1 | + | 30240 | 0.66 | 0.804888 |
Target: 5'- cCGCCGCCGcGCGGG-C-CCCGcGGG-GCg -3' miRNA: 3'- -GCGGCGGU-CGUUCaGcGGGC-CUUaCG- -5' |
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6388 | 3' | -58.2 | NC_001847.1 | + | 28852 | 0.66 | 0.804888 |
Target: 5'- uGCCGCCGGUcgGGGaCGCCauGGccGCg -3' miRNA: 3'- gCGGCGGUCG--UUCaGCGGgcCUuaCG- -5' |
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6388 | 3' | -58.2 | NC_001847.1 | + | 3099 | 0.66 | 0.804888 |
Target: 5'- cCGCgGCCGGCAGGccgCGgCCCGccgcgGCc -3' miRNA: 3'- -GCGgCGGUCGUUCa--GC-GGGCcuua-CG- -5' |
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6388 | 3' | -58.2 | NC_001847.1 | + | 116654 | 0.66 | 0.804888 |
Target: 5'- aGCCGCgGGCAcgcuGGUgGCCUGc-GUGUg -3' miRNA: 3'- gCGGCGgUCGU----UCAgCGGGCcuUACG- -5' |
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6388 | 3' | -58.2 | NC_001847.1 | + | 115120 | 0.66 | 0.804888 |
Target: 5'- gGCgGCC-GCAGGgcCGCCCuauuGGaAGUGCg -3' miRNA: 3'- gCGgCGGuCGUUCa-GCGGG----CC-UUACG- -5' |
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6388 | 3' | -58.2 | NC_001847.1 | + | 58304 | 0.66 | 0.804888 |
Target: 5'- gGCgGCCGGCAGGccggcauggCGCCgCGuauAGUGCa -3' miRNA: 3'- gCGgCGGUCGUUCa--------GCGG-GCc--UUACG- -5' |
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6388 | 3' | -58.2 | NC_001847.1 | + | 46318 | 0.66 | 0.804888 |
Target: 5'- gCGCCGagcgCAGCAcGGcCGCCCGcGGGgccGCg -3' miRNA: 3'- -GCGGCg---GUCGU-UCaGCGGGC-CUUa--CG- -5' |
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6388 | 3' | -58.2 | NC_001847.1 | + | 15781 | 0.66 | 0.804888 |
Target: 5'- gCGCCGaguuucgagaaCCAGC-AGUC-CCCGGccgGCa -3' miRNA: 3'- -GCGGC-----------GGUCGuUCAGcGGGCCuuaCG- -5' |
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6388 | 3' | -58.2 | NC_001847.1 | + | 69422 | 0.66 | 0.804888 |
Target: 5'- gCGCCGCCccGGCGGG-C-UCUGGGAUGa -3' miRNA: 3'- -GCGGCGG--UCGUUCaGcGGGCCUUACg -5' |
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6388 | 3' | -58.2 | NC_001847.1 | + | 127411 | 0.66 | 0.804888 |
Target: 5'- cCGCCGCCuccGCGcccgCGCCCugcgccuGAAUGCc -3' miRNA: 3'- -GCGGCGGu--CGUuca-GCGGGc------CUUACG- -5' |
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6388 | 3' | -58.2 | NC_001847.1 | + | 35473 | 0.66 | 0.812743 |
Target: 5'- cCGCaaaGCCAGCcuuugGGGUCcggcgcgcguuauGCUCGGcGUGCg -3' miRNA: 3'- -GCGg--CGGUCG-----UUCAG-------------CGGGCCuUACG- -5' |
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6388 | 3' | -58.2 | NC_001847.1 | + | 107229 | 0.66 | 0.813607 |
Target: 5'- gGCCGCCcuggccuccGCAAGcgCGgCCGGGccgGCg -3' miRNA: 3'- gCGGCGGu--------CGUUCa-GCgGGCCUua-CG- -5' |
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6388 | 3' | -58.2 | NC_001847.1 | + | 72542 | 0.66 | 0.813607 |
Target: 5'- uCGCgGCgAGCGGGgcgaUCGCCgCGGg--GCa -3' miRNA: 3'- -GCGgCGgUCGUUC----AGCGG-GCCuuaCG- -5' |
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6388 | 3' | -58.2 | NC_001847.1 | + | 67844 | 0.66 | 0.813607 |
Target: 5'- gGCUGCCGGCGcuGG-CGCgCGGcucGCg -3' miRNA: 3'- gCGGCGGUCGU--UCaGCGgGCCuuaCG- -5' |
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6388 | 3' | -58.2 | NC_001847.1 | + | 42725 | 0.66 | 0.813607 |
Target: 5'- gCGCgGCgGGC-GGcCGCgCGGGcgGCg -3' miRNA: 3'- -GCGgCGgUCGuUCaGCGgGCCUuaCG- -5' |
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6388 | 3' | -58.2 | NC_001847.1 | + | 106946 | 0.66 | 0.813607 |
Target: 5'- aCGCCGCCGuggcgcGCAGG-CGCgCGGcc-GCc -3' miRNA: 3'- -GCGGCGGU------CGUUCaGCGgGCCuuaCG- -5' |
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6388 | 3' | -58.2 | NC_001847.1 | + | 106377 | 0.66 | 0.813607 |
Target: 5'- uGUCGUCGGCGAGaagGCCCGcGucgGCa -3' miRNA: 3'- gCGGCGGUCGUUCag-CGGGC-CuuaCG- -5' |
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6388 | 3' | -58.2 | NC_001847.1 | + | 22091 | 0.66 | 0.813607 |
Target: 5'- aGCgGgcCCGGCAGG-CGCgCCGGGG-GCg -3' miRNA: 3'- gCGgC--GGUCGUUCaGCG-GGCCUUaCG- -5' |
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6388 | 3' | -58.2 | NC_001847.1 | + | 37137 | 0.66 | 0.813607 |
Target: 5'- gCGCaCGcCCAGCGGGccuuuggggCGgCCGGGAaGCg -3' miRNA: 3'- -GCG-GC-GGUCGUUCa--------GCgGGCCUUaCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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