miRNA display CGI


Results 41 - 60 of 519 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6388 3' -58.2 NC_001847.1 + 106946 0.66 0.813607
Target:  5'- aCGCCGCCGuggcgcGCAGG-CGCgCGGcc-GCc -3'
miRNA:   3'- -GCGGCGGU------CGUUCaGCGgGCCuuaCG- -5'
6388 3' -58.2 NC_001847.1 + 42725 0.66 0.813607
Target:  5'- gCGCgGCgGGC-GGcCGCgCGGGcgGCg -3'
miRNA:   3'- -GCGgCGgUCGuUCaGCGgGCCUuaCG- -5'
6388 3' -58.2 NC_001847.1 + 67844 0.66 0.813607
Target:  5'- gGCUGCCGGCGcuGG-CGCgCGGcucGCg -3'
miRNA:   3'- gCGGCGGUCGU--UCaGCGgGCCuuaCG- -5'
6388 3' -58.2 NC_001847.1 + 72542 0.66 0.813607
Target:  5'- uCGCgGCgAGCGGGgcgaUCGCCgCGGg--GCa -3'
miRNA:   3'- -GCGgCGgUCGUUC----AGCGG-GCCuuaCG- -5'
6388 3' -58.2 NC_001847.1 + 107229 0.66 0.813607
Target:  5'- gGCCGCCcuggccuccGCAAGcgCGgCCGGGccgGCg -3'
miRNA:   3'- gCGGCGGu--------CGUUCa-GCgGGCCUua-CG- -5'
6388 3' -58.2 NC_001847.1 + 3099 0.66 0.804888
Target:  5'- cCGCgGCCGGCAGGccgCGgCCCGccgcgGCc -3'
miRNA:   3'- -GCGgCGGUCGUUCa--GC-GGGCcuua-CG- -5'
6388 3' -58.2 NC_001847.1 + 116654 0.66 0.804888
Target:  5'- aGCCGCgGGCAcgcuGGUgGCCUGc-GUGUg -3'
miRNA:   3'- gCGGCGgUCGU----UCAgCGGGCcuUACG- -5'
6388 3' -58.2 NC_001847.1 + 54106 0.66 0.796014
Target:  5'- aCGUCGCCcccgcaguccgcGGCGGcGUCGCCC---AUGCg -3'
miRNA:   3'- -GCGGCGG------------UCGUU-CAGCGGGccuUACG- -5'
6388 3' -58.2 NC_001847.1 + 82548 0.66 0.796014
Target:  5'- gCGCCGCCcGCGGGcUCGgCCuCGGcc-GCc -3'
miRNA:   3'- -GCGGCGGuCGUUC-AGC-GG-GCCuuaCG- -5'
6388 3' -58.2 NC_001847.1 + 83742 0.66 0.796014
Target:  5'- gCGCCGCC-GCAAGguUCGgCgCCGcGAccGCg -3'
miRNA:   3'- -GCGGCGGuCGUUC--AGC-G-GGC-CUuaCG- -5'
6388 3' -58.2 NC_001847.1 + 86872 0.66 0.796014
Target:  5'- gGCCGCCGuCGAccuaGCCugCGGggUGCg -3'
miRNA:   3'- gCGGCGGUcGUUcag-CGG--GCCuuACG- -5'
6388 3' -58.2 NC_001847.1 + 97763 0.66 0.796014
Target:  5'- uCGuuGUCAGCGcacCGCCgGGGAUGa -3'
miRNA:   3'- -GCggCGGUCGUucaGCGGgCCUUACg -5'
6388 3' -58.2 NC_001847.1 + 125112 0.66 0.796014
Target:  5'- uCGCgG-CGGCGAGaaGCCCGGAGcccucGCa -3'
miRNA:   3'- -GCGgCgGUCGUUCagCGGGCCUUa----CG- -5'
6388 3' -58.2 NC_001847.1 + 81691 0.66 0.799582
Target:  5'- uCGCCGCCGuaGAG-CGCCaggcgcgcgcgccggUGGAAgcgGCa -3'
miRNA:   3'- -GCGGCGGUcgUUCaGCGG---------------GCCUUa--CG- -5'
6388 3' -58.2 NC_001847.1 + 102485 0.66 0.802242
Target:  5'- gCGCCGCCGGCGccguccaccUCGCCCuccagcucguccacGGcgucGUGCa -3'
miRNA:   3'- -GCGGCGGUCGUuc-------AGCGGG--------------CCu---UACG- -5'
6388 3' -58.2 NC_001847.1 + 53797 0.66 0.804007
Target:  5'- cCGCCGCgAGgAGGUCugcgcccccuggcGCgCCGGAGcggggGCg -3'
miRNA:   3'- -GCGGCGgUCgUUCAG-------------CG-GGCCUUa----CG- -5'
6388 3' -58.2 NC_001847.1 + 15781 0.66 0.804888
Target:  5'- gCGCCGaguuucgagaaCCAGC-AGUC-CCCGGccgGCa -3'
miRNA:   3'- -GCGGC-----------GGUCGuUCAGcGGGCCuuaCG- -5'
6388 3' -58.2 NC_001847.1 + 46318 0.66 0.804888
Target:  5'- gCGCCGagcgCAGCAcGGcCGCCCGcGGGgccGCg -3'
miRNA:   3'- -GCGGCg---GUCGU-UCaGCGGGC-CUUa--CG- -5'
6388 3' -58.2 NC_001847.1 + 58304 0.66 0.804888
Target:  5'- gGCgGCCGGCAGGccggcauggCGCCgCGuauAGUGCa -3'
miRNA:   3'- gCGgCGGUCGUUCa--------GCGG-GCc--UUACG- -5'
6388 3' -58.2 NC_001847.1 + 115120 0.66 0.804888
Target:  5'- gGCgGCC-GCAGGgcCGCCCuauuGGaAGUGCg -3'
miRNA:   3'- gCGgCGGuCGUUCa-GCGGG----CC-UUACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.