miRNA display CGI


Results 61 - 80 of 519 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6388 3' -58.2 NC_001847.1 + 15781 0.66 0.804888
Target:  5'- gCGCCGaguuucgagaaCCAGC-AGUC-CCCGGccgGCa -3'
miRNA:   3'- -GCGGC-----------GGUCGuUCAGcGGGCCuuaCG- -5'
6388 3' -58.2 NC_001847.1 + 53797 0.66 0.804007
Target:  5'- cCGCCGCgAGgAGGUCugcgcccccuggcGCgCCGGAGcggggGCg -3'
miRNA:   3'- -GCGGCGgUCgUUCAG-------------CG-GGCCUUa----CG- -5'
6388 3' -58.2 NC_001847.1 + 16213 0.66 0.796014
Target:  5'- gGCCGUCuGCGaagggcgacGGUauggGCCCGGuAGUGUg -3'
miRNA:   3'- gCGGCGGuCGU---------UCAg---CGGGCC-UUACG- -5'
6388 3' -58.2 NC_001847.1 + 102413 0.66 0.792424
Target:  5'- aGCCGCCGGCcggaggccgaGAGgcgcuccaugaagCGCgCCGaGAcgGCg -3'
miRNA:   3'- gCGGCGGUCG----------UUCa------------GCG-GGC-CUuaCG- -5'
6388 3' -58.2 NC_001847.1 + 38421 0.66 0.786995
Target:  5'- uCGCCGCaggGGCGGGa-GCCCGaGGGgcggGCa -3'
miRNA:   3'- -GCGGCGg--UCGUUCagCGGGC-CUUa---CG- -5'
6388 3' -58.2 NC_001847.1 + 132286 0.66 0.786995
Target:  5'- aCGaCGCCcGCGAGUCGCagCGGcaugGCg -3'
miRNA:   3'- -GCgGCGGuCGUUCAGCGg-GCCuua-CG- -5'
6388 3' -58.2 NC_001847.1 + 99603 0.66 0.786995
Target:  5'- gCGCCGCCucGGCAGccacgaccUCGCCgaGG-AUGCg -3'
miRNA:   3'- -GCGGCGG--UCGUUc-------AGCGGg-CCuUACG- -5'
6388 3' -58.2 NC_001847.1 + 28336 0.66 0.786995
Target:  5'- cCGgCGCCccGCGGGgccgcgCGCCCGGGcccccgGCg -3'
miRNA:   3'- -GCgGCGGu-CGUUCa-----GCGGGCCUua----CG- -5'
6388 3' -58.2 NC_001847.1 + 3252 0.66 0.786995
Target:  5'- uCGCCGgCGGCAGGggCGCCgGcGccGCg -3'
miRNA:   3'- -GCGGCgGUCGUUCa-GCGGgCcUuaCG- -5'
6388 3' -58.2 NC_001847.1 + 101169 0.66 0.786995
Target:  5'- aGCCcgGCCAGCg---CGCCCGGcgccaGCg -3'
miRNA:   3'- gCGG--CGGUCGuucaGCGGGCCuua--CG- -5'
6388 3' -58.2 NC_001847.1 + 27419 0.66 0.796014
Target:  5'- uGCCGCCGGCGcggucgguGUCGUUCGcagcgGCg -3'
miRNA:   3'- gCGGCGGUCGUu-------CAGCGGGCcuua-CG- -5'
6388 3' -58.2 NC_001847.1 + 34563 0.66 0.796014
Target:  5'- gGCCGCugCAGCGGcGgcagCGCCUGGcg-GCa -3'
miRNA:   3'- gCGGCG--GUCGUU-Ca---GCGGGCCuuaCG- -5'
6388 3' -58.2 NC_001847.1 + 102485 0.66 0.802242
Target:  5'- gCGCCGCCGGCGccguccaccUCGCCCuccagcucguccacGGcgucGUGCa -3'
miRNA:   3'- -GCGGCGGUCGUuc-------AGCGGG--------------CCu---UACG- -5'
6388 3' -58.2 NC_001847.1 + 81691 0.66 0.799582
Target:  5'- uCGCCGCCGuaGAG-CGCCaggcgcgcgcgccggUGGAAgcgGCa -3'
miRNA:   3'- -GCGGCGGUcgUUCaGCGG---------------GCCUUa--CG- -5'
6388 3' -58.2 NC_001847.1 + 125112 0.66 0.796014
Target:  5'- uCGCgG-CGGCGAGaaGCCCGGAGcccucGCa -3'
miRNA:   3'- -GCGgCgGUCGUUCagCGGGCCUUa----CG- -5'
6388 3' -58.2 NC_001847.1 + 97763 0.66 0.796014
Target:  5'- uCGuuGUCAGCGcacCGCCgGGGAUGa -3'
miRNA:   3'- -GCggCGGUCGUucaGCGGgCCUUACg -5'
6388 3' -58.2 NC_001847.1 + 86872 0.66 0.796014
Target:  5'- gGCCGCCGuCGAccuaGCCugCGGggUGCg -3'
miRNA:   3'- gCGGCGGUcGUUcag-CGG--GCCuuACG- -5'
6388 3' -58.2 NC_001847.1 + 83742 0.66 0.796014
Target:  5'- gCGCCGCC-GCAAGguUCGgCgCCGcGAccGCg -3'
miRNA:   3'- -GCGGCGGuCGUUC--AGC-G-GGC-CUuaCG- -5'
6388 3' -58.2 NC_001847.1 + 82548 0.66 0.796014
Target:  5'- gCGCCGCCcGCGGGcUCGgCCuCGGcc-GCc -3'
miRNA:   3'- -GCGGCGGuCGUUC-AGC-GG-GCCuuaCG- -5'
6388 3' -58.2 NC_001847.1 + 54106 0.66 0.796014
Target:  5'- aCGUCGCCcccgcaguccgcGGCGGcGUCGCCC---AUGCg -3'
miRNA:   3'- -GCGGCGG------------UCGUU-CAGCGGGccuUACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.