Results 101 - 120 of 519 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6388 | 3' | -58.2 | NC_001847.1 | + | 84243 | 0.67 | 0.75915 |
Target: 5'- gGCCGCgCGGUAcGUgGCCUGcauGAUGCu -3' miRNA: 3'- gCGGCG-GUCGUuCAgCGGGCc--UUACG- -5' |
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6388 | 3' | -58.2 | NC_001847.1 | + | 52695 | 0.67 | 0.75915 |
Target: 5'- aCGCgGCCGuGCGcggGGUUGCCgGGAAg-- -3' miRNA: 3'- -GCGgCGGU-CGU---UCAGCGGgCCUUacg -5' |
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6388 | 3' | -58.2 | NC_001847.1 | + | 48067 | 0.67 | 0.75915 |
Target: 5'- gCGCCGCgaaaGGCGGGggcgcacgcCGCgCGGAAgcUGCa -3' miRNA: 3'- -GCGGCGg---UCGUUCa--------GCGgGCCUU--ACG- -5' |
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6388 | 3' | -58.2 | NC_001847.1 | + | 12849 | 0.67 | 0.75915 |
Target: 5'- -aCCGaUAGCAgaaAGgaaUCGCCCGGggUGUa -3' miRNA: 3'- gcGGCgGUCGU---UC---AGCGGGCCuuACG- -5' |
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6388 | 3' | -58.2 | NC_001847.1 | + | 3224 | 0.67 | 0.75915 |
Target: 5'- aGCCGCUcGCGcGcCGCCCGcgccGUGCu -3' miRNA: 3'- gCGGCGGuCGUuCaGCGGGCcu--UACG- -5' |
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6388 | 3' | -58.2 | NC_001847.1 | + | 51523 | 0.66 | 0.777839 |
Target: 5'- gCGgCGCCGGCAGGcgggggcggCGCCCaGGcgucgGCg -3' miRNA: 3'- -GCgGCGGUCGUUCa--------GCGGG-CCuua--CG- -5' |
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6388 | 3' | -58.2 | NC_001847.1 | + | 38496 | 0.66 | 0.777839 |
Target: 5'- aCGUCGCCGGgGggcggcgcGGUCGCC-GGcgcuGUGCu -3' miRNA: 3'- -GCGGCGGUCgU--------UCAGCGGgCCu---UACG- -5' |
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6388 | 3' | -58.2 | NC_001847.1 | + | 16213 | 0.66 | 0.796014 |
Target: 5'- gGCCGUCuGCGaagggcgacGGUauggGCCCGGuAGUGUg -3' miRNA: 3'- gCGGCGGuCGU---------UCAg---CGGGCC-UUACG- -5' |
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6388 | 3' | -58.2 | NC_001847.1 | + | 102413 | 0.66 | 0.792424 |
Target: 5'- aGCCGCCGGCcggaggccgaGAGgcgcuccaugaagCGCgCCGaGAcgGCg -3' miRNA: 3'- gCGGCGGUCG----------UUCa------------GCG-GGC-CUuaCG- -5' |
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6388 | 3' | -58.2 | NC_001847.1 | + | 38421 | 0.66 | 0.786995 |
Target: 5'- uCGCCGCaggGGCGGGa-GCCCGaGGGgcggGCa -3' miRNA: 3'- -GCGGCGg--UCGUUCagCGGGC-CUUa---CG- -5' |
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6388 | 3' | -58.2 | NC_001847.1 | + | 132286 | 0.66 | 0.786995 |
Target: 5'- aCGaCGCCcGCGAGUCGCagCGGcaugGCg -3' miRNA: 3'- -GCgGCGGuCGUUCAGCGg-GCCuua-CG- -5' |
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6388 | 3' | -58.2 | NC_001847.1 | + | 99603 | 0.66 | 0.786995 |
Target: 5'- gCGCCGCCucGGCAGccacgaccUCGCCgaGG-AUGCg -3' miRNA: 3'- -GCGGCGG--UCGUUc-------AGCGGg-CCuUACG- -5' |
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6388 | 3' | -58.2 | NC_001847.1 | + | 28336 | 0.66 | 0.786995 |
Target: 5'- cCGgCGCCccGCGGGgccgcgCGCCCGGGcccccgGCg -3' miRNA: 3'- -GCgGCGGu-CGUUCa-----GCGGGCCUua----CG- -5' |
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6388 | 3' | -58.2 | NC_001847.1 | + | 3252 | 0.66 | 0.786995 |
Target: 5'- uCGCCGgCGGCAGGggCGCCgGcGccGCg -3' miRNA: 3'- -GCGGCgGUCGUUCa-GCGGgCcUuaCG- -5' |
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6388 | 3' | -58.2 | NC_001847.1 | + | 101169 | 0.66 | 0.786995 |
Target: 5'- aGCCcgGCCAGCg---CGCCCGGcgccaGCg -3' miRNA: 3'- gCGG--CGGUCGuucaGCGGGCCuua--CG- -5' |
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6388 | 3' | -58.2 | NC_001847.1 | + | 123474 | 0.66 | 0.777839 |
Target: 5'- gGCCGCC-GCGGGcUCGgCUGGGGccGCc -3' miRNA: 3'- gCGGCGGuCGUUC-AGCgGGCCUUa-CG- -5' |
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6388 | 3' | -58.2 | NC_001847.1 | + | 105882 | 0.66 | 0.777839 |
Target: 5'- uCGCCGCCAcGU-AGUCcgugcgcgGCCgCGGGgccAUGCa -3' miRNA: 3'- -GCGGCGGU-CGuUCAG--------CGG-GCCU---UACG- -5' |
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6388 | 3' | -58.2 | NC_001847.1 | + | 27553 | 0.66 | 0.777839 |
Target: 5'- aCGCacccacgGCCGGuCAugucGUCGCCCGGcagGCu -3' miRNA: 3'- -GCGg------CGGUC-GUu---CAGCGGGCCuuaCG- -5' |
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6388 | 3' | -58.2 | NC_001847.1 | + | 103410 | 0.66 | 0.777839 |
Target: 5'- gCGCCGCUcgacauagGGCucGUCGUCCaGGuAUGUc -3' miRNA: 3'- -GCGGCGG--------UCGuuCAGCGGG-CCuUACG- -5' |
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6388 | 3' | -58.2 | NC_001847.1 | + | 68912 | 0.66 | 0.777839 |
Target: 5'- gCGCCGCCGcGCugAGGUUcggcgcggcgGCCgCGGGcUGCg -3' miRNA: 3'- -GCGGCGGU-CG--UUCAG----------CGG-GCCUuACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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