miRNA display CGI


Results 1 - 20 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6388 5' -53.9 NC_001847.1 + 113932 0.66 0.944799
Target:  5'- gCAGCGCGC-GGUCGcgG-CGGCGUc- -3'
miRNA:   3'- -GUCGUGCGaCUAGCaaCaGUCGCGug -5'
6388 5' -53.9 NC_001847.1 + 81864 0.66 0.944799
Target:  5'- gAGCGCGCguucGUCGgacUCGGcCGCGCg -3'
miRNA:   3'- gUCGUGCGac--UAGCaacAGUC-GCGUG- -5'
6388 5' -53.9 NC_001847.1 + 106616 0.66 0.944799
Target:  5'- -cGCACGCggccGggCGgcGgCGGCGCGCu -3'
miRNA:   3'- guCGUGCGa---CuaGCaaCaGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 3803 0.66 0.944799
Target:  5'- -cGCACGCggccGggCGgcGgCGGCGCGCu -3'
miRNA:   3'- guCGUGCGa---CuaGCaaCaGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 53720 0.66 0.944799
Target:  5'- gCGGCuCGCgGggCGga-UCGGCGCGCg -3'
miRNA:   3'- -GUCGuGCGaCuaGCaacAGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 47855 0.66 0.944799
Target:  5'- uCGGC-CGCggccgCGggccGUCGGCGCGCa -3'
miRNA:   3'- -GUCGuGCGacua-GCaa--CAGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 57305 0.66 0.944799
Target:  5'- cCAGCGCGCUGGc------CAGUGCGCg -3'
miRNA:   3'- -GUCGUGCGACUagcaacaGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 77285 0.66 0.944799
Target:  5'- gAGCGCGCgcguggUGAUCGg-GUaCAGCGCc- -3'
miRNA:   3'- gUCGUGCG------ACUAGCaaCA-GUCGCGug -5'
6388 5' -53.9 NC_001847.1 + 19628 0.66 0.944799
Target:  5'- cCGGgGCGC----CGgcGUCGGCGCGCg -3'
miRNA:   3'- -GUCgUGCGacuaGCaaCAGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 122110 0.66 0.940075
Target:  5'- gCAGUugGCGCUGAcgcugcaggUCGcgacgGcCGGCGCGCa -3'
miRNA:   3'- -GUCG--UGCGACU---------AGCaa---CaGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 34766 0.66 0.940075
Target:  5'- uGGCGCgGCUGcgCGccgcGgccgCGGCGCGCg -3'
miRNA:   3'- gUCGUG-CGACuaGCaa--Ca---GUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 14450 0.66 0.940075
Target:  5'- gAGCGCGCggccgCGcUGcUCGGCGUGCg -3'
miRNA:   3'- gUCGUGCGacua-GCaAC-AGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 54158 0.66 0.940075
Target:  5'- gCAGCGCGUccuccgCGUcGUCAaacGCGCGCa -3'
miRNA:   3'- -GUCGUGCGacua--GCAaCAGU---CGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 94358 0.66 0.940075
Target:  5'- gAGgACGCUGGcgcggCGgcGUCugccGCGCGCa -3'
miRNA:   3'- gUCgUGCGACUa----GCaaCAGu---CGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 14020 0.66 0.940075
Target:  5'- gCAGCAgGCgg--CGgcG-CAGCGCGCa -3'
miRNA:   3'- -GUCGUgCGacuaGCaaCaGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 50047 0.66 0.935098
Target:  5'- gGGCGCGgUGG-CGgccgcggGUCcGCGCGCg -3'
miRNA:   3'- gUCGUGCgACUaGCaa-----CAGuCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 53267 0.66 0.935098
Target:  5'- gCGGgGCGCUGcgCGccca-GGCGCGCg -3'
miRNA:   3'- -GUCgUGCGACuaGCaacagUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 46684 0.66 0.935098
Target:  5'- gCAGCACGCgcgcgcGGUCGggGcccgCGGCcCACg -3'
miRNA:   3'- -GUCGUGCGa-----CUAGCaaCa---GUCGcGUG- -5'
6388 5' -53.9 NC_001847.1 + 18214 0.66 0.935098
Target:  5'- gGGCugGCgGucucUCGgcgGUCGuGCGCGCg -3'
miRNA:   3'- gUCGugCGaCu---AGCaa-CAGU-CGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 34155 0.66 0.935098
Target:  5'- gAGCGCGCUGcgCGagG-CGGCugagGCGCu -3'
miRNA:   3'- gUCGUGCGACuaGCaaCaGUCG----CGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.