miRNA display CGI


Results 21 - 40 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6388 5' -53.9 NC_001847.1 + 57305 0.66 0.944799
Target:  5'- cCAGCGCGCUGGc------CAGUGCGCg -3'
miRNA:   3'- -GUCGUGCGACUagcaacaGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 47855 0.66 0.944799
Target:  5'- uCGGC-CGCggccgCGggccGUCGGCGCGCa -3'
miRNA:   3'- -GUCGuGCGacua-GCaa--CAGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 53720 0.66 0.944799
Target:  5'- gCGGCuCGCgGggCGga-UCGGCGCGCg -3'
miRNA:   3'- -GUCGuGCGaCuaGCaacAGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 3803 0.66 0.944799
Target:  5'- -cGCACGCggccGggCGgcGgCGGCGCGCu -3'
miRNA:   3'- guCGUGCGa---CuaGCaaCaGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 54158 0.66 0.940075
Target:  5'- gCAGCGCGUccuccgCGUcGUCAaacGCGCGCa -3'
miRNA:   3'- -GUCGUGCGacua--GCAaCAGU---CGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 94358 0.66 0.940075
Target:  5'- gAGgACGCUGGcgcggCGgcGUCugccGCGCGCa -3'
miRNA:   3'- gUCgUGCGACUa----GCaaCAGu---CGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 14020 0.66 0.940075
Target:  5'- gCAGCAgGCgg--CGgcG-CAGCGCGCa -3'
miRNA:   3'- -GUCGUgCGacuaGCaaCaGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 46684 0.66 0.935098
Target:  5'- gCAGCACGCgcgcgcGGUCGggGcccgCGGCcCACg -3'
miRNA:   3'- -GUCGUGCGa-----CUAGCaaCa---GUCGcGUG- -5'
6388 5' -53.9 NC_001847.1 + 97445 0.66 0.929866
Target:  5'- gCAGCGCGCacgUGA-CGagGUCcAGCGCGu -3'
miRNA:   3'- -GUCGUGCG---ACUaGCaaCAG-UCGCGUg -5'
6388 5' -53.9 NC_001847.1 + 12811 0.66 0.924379
Target:  5'- uCAGCGCGUgGcgCGcgagCGGCGCGCu -3'
miRNA:   3'- -GUCGUGCGaCuaGCaacaGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 113932 0.66 0.944799
Target:  5'- gCAGCGCGC-GGUCGcgG-CGGCGUc- -3'
miRNA:   3'- -GUCGUGCGaCUAGCaaCaGUCGCGug -5'
6388 5' -53.9 NC_001847.1 + 29339 0.66 0.924379
Target:  5'- gAGCGCGCg---CGgcucCAGCGCGCg -3'
miRNA:   3'- gUCGUGCGacuaGCaacaGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 22124 0.66 0.929866
Target:  5'- gGGCGCGCccUGGgcccggCGgcGgcggCGGCGCGCa -3'
miRNA:   3'- gUCGUGCG--ACUa-----GCaaCa---GUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 36389 0.67 0.893138
Target:  5'- gCAGCGCGCgccgCGgcGaCGGUGCACu -3'
miRNA:   3'- -GUCGUGCGacuaGCaaCaGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 90227 0.67 0.912639
Target:  5'- aCAGCACGCg---CGc-GUC-GCGCACg -3'
miRNA:   3'- -GUCGUGCGacuaGCaaCAGuCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 30740 0.67 0.893138
Target:  5'- -cGCGCGCUGGccCGag--CGGCGCGCu -3'
miRNA:   3'- guCGUGCGACUa-GCaacaGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 97009 0.67 0.912639
Target:  5'- uCGGCgGCGCUGGccgCGggGggCAGCGCGu -3'
miRNA:   3'- -GUCG-UGCGACUa--GCaaCa-GUCGCGUg -5'
6388 5' -53.9 NC_001847.1 + 56727 0.67 0.912639
Target:  5'- uCAGCGCGCg---CGccagCAGCGCGCc -3'
miRNA:   3'- -GUCGUGCGacuaGCaacaGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 54584 0.67 0.886144
Target:  5'- -cGCGgGCUGggCGgcgcUGgCGGCGCGCg -3'
miRNA:   3'- guCGUgCGACuaGCa---ACaGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 46193 0.67 0.893138
Target:  5'- gGGCGCGgaGAggUCGgcgUGUCcgucGCGCAUg -3'
miRNA:   3'- gUCGUGCgaCU--AGCa--ACAGu---CGCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.