miRNA display CGI


Results 61 - 80 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6388 5' -53.9 NC_001847.1 + 72052 0.68 0.847688
Target:  5'- -cGCACGCg---CGgcgGUUGGCGCGCa -3'
miRNA:   3'- guCGUGCGacuaGCaa-CAGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 53295 0.68 0.878911
Target:  5'- -cGCGCGCUcGAUCGccGcCAGUGCGg -3'
miRNA:   3'- guCGUGCGA-CUAGCaaCaGUCGCGUg -5'
6388 5' -53.9 NC_001847.1 + 37682 0.68 0.878911
Target:  5'- uUAGCGCGCggcccugGcgCGgcugCGGCGCGCg -3'
miRNA:   3'- -GUCGUGCGa------CuaGCaacaGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 103760 0.68 0.871443
Target:  5'- -cGCGCGCUGGgacUUGggUGcUCAGgGCGCg -3'
miRNA:   3'- guCGUGCGACU---AGCa-AC-AGUCgCGUG- -5'
6388 5' -53.9 NC_001847.1 + 101551 0.68 0.871443
Target:  5'- cCAGCugGCgcagGA-CGUcGUCGGCaccGCGCa -3'
miRNA:   3'- -GUCGugCGa---CUaGCAaCAGUCG---CGUG- -5'
6388 5' -53.9 NC_001847.1 + 12393 0.68 0.863745
Target:  5'- gGGCGCGUgUGGUCGgUGaCcGCGCGCa -3'
miRNA:   3'- gUCGUGCG-ACUAGCaACaGuCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 71881 0.68 0.860604
Target:  5'- gAGCGCGCggcccGUUGUUGUCuuucccagcccguGCGCGCc -3'
miRNA:   3'- gUCGUGCGac---UAGCAACAGu------------CGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 69497 0.68 0.855825
Target:  5'- gGGCGCGCacgcGGcCGUUGgCGGCGCAg -3'
miRNA:   3'- gUCGUGCGa---CUaGCAACaGUCGCGUg -5'
6388 5' -53.9 NC_001847.1 + 80509 0.69 0.794765
Target:  5'- gAGC-CGCUcGGcauagCGcUGUCGGCGCACg -3'
miRNA:   3'- gUCGuGCGA-CUa----GCaACAGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 62425 0.69 0.794765
Target:  5'- uCAGCGCGUaggUGAgCGUguuuucGUCGGCGCGg -3'
miRNA:   3'- -GUCGUGCG---ACUaGCAa-----CAGUCGCGUg -5'
6388 5' -53.9 NC_001847.1 + 74350 0.69 0.839342
Target:  5'- -cGCGCGCUGGUggcgcgCGUgg-UGGCGCGCg -3'
miRNA:   3'- guCGUGCGACUA------GCAacaGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 30510 0.69 0.839342
Target:  5'- gGGCGCGCcgGA-CGUgagcgcgcUCGGCGCGCa -3'
miRNA:   3'- gUCGUGCGa-CUaGCAac------AGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 116292 0.69 0.839342
Target:  5'- gCAGCGugcccCGCUGAccCGUg--CGGCGCGCg -3'
miRNA:   3'- -GUCGU-----GCGACUa-GCAacaGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 35667 0.69 0.813131
Target:  5'- gCGGauCGCGCUGAUC-UUGgccccgagCGGCGCGCu -3'
miRNA:   3'- -GUC--GUGCGACUAGcAACa-------GUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 113326 0.69 0.804031
Target:  5'- gCGGCugGUgcaaGUCGgugUGgCAGCGCACg -3'
miRNA:   3'- -GUCGugCGac--UAGCa--ACaGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 92712 0.69 0.798491
Target:  5'- gAGCGCGCgccAUCGccgccaccggcgccgUcGUCAGCGCGCg -3'
miRNA:   3'- gUCGUGCGac-UAGC---------------AaCAGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 29689 0.69 0.811325
Target:  5'- gCAGCugaugGCGCUGAUCGcUUGggcgcgagacugCGGCGCGg -3'
miRNA:   3'- -GUCG-----UGCGACUAGC-AACa-----------GUCGCGUg -5'
6388 5' -53.9 NC_001847.1 + 98549 0.69 0.822055
Target:  5'- uGGCACGCUGGUCuucuagcgcUGUUA-CGCACg -3'
miRNA:   3'- gUCGUGCGACUAGca-------ACAGUcGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 77851 0.69 0.830795
Target:  5'- cCAGCGCGCUGGgggcgcucUCGgcccgggaguuuUUGaaCAGCGCGCu -3'
miRNA:   3'- -GUCGUGCGACU--------AGC------------AACa-GUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 70284 0.69 0.830795
Target:  5'- -cGCGCGcCUGG-CGggGUCgcGGCGCGCc -3'
miRNA:   3'- guCGUGC-GACUaGCaaCAG--UCGCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.