Results 101 - 109 of 109 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
|
P value |
| Predicted miRNA align pattern | |||||||
| 6388 | 5' | -53.9 | NC_001847.1 | + | 1589 | 0.71 | 0.695118 |
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Target: 5'- cCAGCGCGCcGcUCGg-GcCAGCGCGCg -3' miRNA: 3'- -GUCGUGCGaCuAGCaaCaGUCGCGUG- -5' |
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| 6388 | 5' | -53.9 | NC_001847.1 | + | 15449 | 0.72 | 0.631968 |
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Target: 5'- uGGCGCuGCUGAaaagCGUgg-CGGCGCACg -3' miRNA: 3'- gUCGUG-CGACUa---GCAacaGUCGCGUG- -5' |
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| 6388 | 5' | -53.9 | NC_001847.1 | + | 100501 | 0.72 | 0.642546 |
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Target: 5'- uCGGCGCGCcGcUCGgccUCGGCGCGCa -3' miRNA: 3'- -GUCGUGCGaCuAGCaacAGUCGCGUG- -5' |
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| 6388 | 5' | -53.9 | NC_001847.1 | + | 74751 | 0.74 | 0.517376 |
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Target: 5'- cCGGCugGgaGA-CGcgGUCGGCGCGCg -3' miRNA: 3'- -GUCGugCgaCUaGCaaCAGUCGCGUG- -5' |
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| 6388 | 5' | -53.9 | NC_001847.1 | + | 70996 | 0.75 | 0.487422 |
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Target: 5'- aCGGCGCGCUGAcggagguuUCGU--UCGGCGCGg -3' miRNA: 3'- -GUCGUGCGACU--------AGCAacAGUCGCGUg -5' |
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| 6388 | 5' | -53.9 | NC_001847.1 | + | 70260 | 0.76 | 0.458312 |
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Target: 5'- gGGCGCGCgg--CGUUGcucUCGGCGCGCg -3' miRNA: 3'- gUCGUGCGacuaGCAAC---AGUCGCGUG- -5' |
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| 6388 | 5' | -53.9 | NC_001847.1 | + | 18600 | 0.76 | 0.420998 |
|
Target: 5'- uUAGCGCGCcGuccgCGgcGUCGGCGCGCg -3' miRNA: 3'- -GUCGUGCGaCua--GCaaCAGUCGCGUG- -5' |
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| 6388 | 5' | -53.9 | NC_001847.1 | + | 122349 | 0.8 | 0.251933 |
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Target: 5'- --aCGCGCUGAUCGUUGggCGGCGUGCg -3' miRNA: 3'- gucGUGCGACUAGCAACa-GUCGCGUG- -5' |
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| 6388 | 5' | -53.9 | NC_001847.1 | + | 97751 | 1.09 | 0.003661 |
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Target: 5'- cCAGCACGCUGAUCGUUGUCAGCGCACc -3' miRNA: 3'- -GUCGUGCGACUAGCAACAGUCGCGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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