miRNA display CGI


Results 21 - 40 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6388 5' -53.9 NC_001847.1 + 63167 0.7 0.775771
Target:  5'- aGGCGCGCacgucGGUCGcgGUC-GCGCGCc -3'
miRNA:   3'- gUCGUGCGa----CUAGCaaCAGuCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 27985 0.7 0.766064
Target:  5'- uGGCgccGCGCUGGgccgCGcUG-CAGCGCGCg -3'
miRNA:   3'- gUCG---UGCGACUa---GCaACaGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 77617 0.7 0.756229
Target:  5'- gCGGCGcCGCUGggCGagGaCGGCGCGCc -3'
miRNA:   3'- -GUCGU-GCGACuaGCaaCaGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 59878 0.7 0.766064
Target:  5'- cCGGCGCGCggccuccgCGUUGgcgaggagggCGGCGCGCg -3'
miRNA:   3'- -GUCGUGCGacua----GCAACa---------GUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 116660 0.7 0.756229
Target:  5'- gGGCACGCUGGUggccugCGUguggGUCcGGCGCuGCg -3'
miRNA:   3'- gUCGUGCGACUA------GCAa---CAG-UCGCG-UG- -5'
6388 5' -53.9 NC_001847.1 + 30247 0.7 0.766064
Target:  5'- -cGCGuguCGCUGGcggCGUUG-CAGCGCGCc -3'
miRNA:   3'- guCGU---GCGACUa--GCAACaGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 35667 0.69 0.813131
Target:  5'- gCGGauCGCGCUGAUC-UUGgccccgagCGGCGCGCu -3'
miRNA:   3'- -GUC--GUGCGACUAGcAACa-------GUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 113326 0.69 0.804031
Target:  5'- gCGGCugGUgcaaGUCGgugUGgCAGCGCACg -3'
miRNA:   3'- -GUCGugCGac--UAGCa--ACaGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 92712 0.69 0.798491
Target:  5'- gAGCGCGCgccAUCGccgccaccggcgccgUcGUCAGCGCGCg -3'
miRNA:   3'- gUCGUGCGac-UAGC---------------AaCAGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 62425 0.69 0.794765
Target:  5'- uCAGCGCGUaggUGAgCGUguuuucGUCGGCGCGg -3'
miRNA:   3'- -GUCGUGCG---ACUaGCAa-----CAGUCGCGUg -5'
6388 5' -53.9 NC_001847.1 + 80509 0.69 0.794765
Target:  5'- gAGC-CGCUcGGcauagCGcUGUCGGCGCACg -3'
miRNA:   3'- gUCGuGCGA-CUa----GCaACAGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 104932 0.69 0.830795
Target:  5'- gGGCGCGCg---CGgcuUCGGCGCGCg -3'
miRNA:   3'- gUCGUGCGacuaGCaacAGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 107142 0.69 0.830795
Target:  5'- gCGGCACGCcGcgCGcUG-CAGCGCGg -3'
miRNA:   3'- -GUCGUGCGaCuaGCaACaGUCGCGUg -5'
6388 5' -53.9 NC_001847.1 + 116292 0.69 0.839342
Target:  5'- gCAGCGugcccCGCUGAccCGUg--CGGCGCGCg -3'
miRNA:   3'- -GUCGU-----GCGACUa-GCAacaGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 74350 0.69 0.839342
Target:  5'- -cGCGCGCUGGUggcgcgCGUgg-UGGCGCGCg -3'
miRNA:   3'- guCGUGCGACUA------GCAacaGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 70284 0.69 0.830795
Target:  5'- -cGCGCGcCUGG-CGggGUCgcGGCGCGCc -3'
miRNA:   3'- guCGUGC-GACUaGCaaCAG--UCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 77851 0.69 0.830795
Target:  5'- cCAGCGCGCUGGgggcgcucUCGgcccgggaguuuUUGaaCAGCGCGCu -3'
miRNA:   3'- -GUCGUGCGACU--------AGC------------AACa-GUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 98549 0.69 0.822055
Target:  5'- uGGCACGCUGGUCuucuagcgcUGUUA-CGCACg -3'
miRNA:   3'- gUCGUGCGACUAGca-------ACAGUcGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 29689 0.69 0.811325
Target:  5'- gCAGCugaugGCGCUGAUCGcUUGggcgcgagacugCGGCGCGg -3'
miRNA:   3'- -GUCG-----UGCGACUAGC-AACa-----------GUCGCGUg -5'
6388 5' -53.9 NC_001847.1 + 30510 0.69 0.839342
Target:  5'- gGGCGCGCcgGA-CGUgagcgcgcUCGGCGCGCa -3'
miRNA:   3'- gUCGUGCGa-CUaGCAac------AGUCGCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.