Results 101 - 109 of 109 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6388 | 5' | -53.9 | NC_001847.1 | + | 54158 | 0.66 | 0.940075 |
Target: 5'- gCAGCGCGUccuccgCGUcGUCAaacGCGCGCa -3' miRNA: 3'- -GUCGUGCGacua--GCAaCAGU---CGCGUG- -5' |
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6388 | 5' | -53.9 | NC_001847.1 | + | 3803 | 0.66 | 0.944799 |
Target: 5'- -cGCACGCggccGggCGgcGgCGGCGCGCu -3' miRNA: 3'- guCGUGCGa---CuaGCaaCaGUCGCGUG- -5' |
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6388 | 5' | -53.9 | NC_001847.1 | + | 53720 | 0.66 | 0.944799 |
Target: 5'- gCGGCuCGCgGggCGga-UCGGCGCGCg -3' miRNA: 3'- -GUCGuGCGaCuaGCaacAGUCGCGUG- -5' |
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6388 | 5' | -53.9 | NC_001847.1 | + | 47855 | 0.66 | 0.944799 |
Target: 5'- uCGGC-CGCggccgCGggccGUCGGCGCGCa -3' miRNA: 3'- -GUCGuGCGacua-GCaa--CAGUCGCGUG- -5' |
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6388 | 5' | -53.9 | NC_001847.1 | + | 57305 | 0.66 | 0.944799 |
Target: 5'- cCAGCGCGCUGGc------CAGUGCGCg -3' miRNA: 3'- -GUCGUGCGACUagcaacaGUCGCGUG- -5' |
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6388 | 5' | -53.9 | NC_001847.1 | + | 77285 | 0.66 | 0.944799 |
Target: 5'- gAGCGCGCgcguggUGAUCGg-GUaCAGCGCc- -3' miRNA: 3'- gUCGUGCG------ACUAGCaaCA-GUCGCGug -5' |
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6388 | 5' | -53.9 | NC_001847.1 | + | 86432 | 0.66 | 0.918636 |
Target: 5'- uGGCgGCGCUGcgCGgcGcgggCAGCGUGCa -3' miRNA: 3'- gUCG-UGCGACuaGCaaCa---GUCGCGUG- -5' |
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6388 | 5' | -53.9 | NC_001847.1 | + | 69023 | 0.66 | 0.918636 |
Target: 5'- gAGC-UGCUGcggugcGUCGcgcUGUCGGCGUACg -3' miRNA: 3'- gUCGuGCGAC------UAGCa--ACAGUCGCGUG- -5' |
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6388 | 5' | -53.9 | NC_001847.1 | + | 113932 | 0.66 | 0.944799 |
Target: 5'- gCAGCGCGC-GGUCGcgG-CGGCGUc- -3' miRNA: 3'- -GUCGUGCGaCUAGCaaCaGUCGCGug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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