miRNA display CGI


Results 1 - 20 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6388 5' -53.9 NC_001847.1 + 97751 1.09 0.003661
Target:  5'- cCAGCACGCUGAUCGUUGUCAGCGCACc -3'
miRNA:   3'- -GUCGUGCGACUAGCAACAGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 122349 0.8 0.251933
Target:  5'- --aCGCGCUGAUCGUUGggCGGCGUGCg -3'
miRNA:   3'- gucGUGCGACUAGCAACa-GUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 18600 0.76 0.420998
Target:  5'- uUAGCGCGCcGuccgCGgcGUCGGCGCGCg -3'
miRNA:   3'- -GUCGUGCGaCua--GCaaCAGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 70260 0.76 0.458312
Target:  5'- gGGCGCGCgg--CGUUGcucUCGGCGCGCg -3'
miRNA:   3'- gUCGUGCGacuaGCAAC---AGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 70996 0.75 0.487422
Target:  5'- aCGGCGCGCUGAcggagguuUCGU--UCGGCGCGg -3'
miRNA:   3'- -GUCGUGCGACU--------AGCAacAGUCGCGUg -5'
6388 5' -53.9 NC_001847.1 + 74751 0.74 0.517376
Target:  5'- cCGGCugGgaGA-CGcgGUCGGCGCGCg -3'
miRNA:   3'- -GUCGugCgaCUaGCaaCAGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 15449 0.72 0.631968
Target:  5'- uGGCGCuGCUGAaaagCGUgg-CGGCGCACg -3'
miRNA:   3'- gUCGUG-CGACUa---GCAacaGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 100501 0.72 0.642546
Target:  5'- uCGGCGCGCcGcUCGgccUCGGCGCGCa -3'
miRNA:   3'- -GUCGUGCGaCuAGCaacAGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 35623 0.71 0.684677
Target:  5'- aAGCGCGCgGcgCGggGcUCGGCGCAa -3'
miRNA:   3'- gUCGUGCGaCuaGCaaC-AGUCGCGUg -5'
6388 5' -53.9 NC_001847.1 + 53437 0.71 0.684677
Target:  5'- uCGGCGCGCg---CGUgccgCAGCGCGCg -3'
miRNA:   3'- -GUCGUGCGacuaGCAaca-GUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 104402 0.71 0.695118
Target:  5'- cCAGCGCGCcGcUCGg-GcCAGCGCGCg -3'
miRNA:   3'- -GUCGUGCGaCuAGCaaCaGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 98724 0.71 0.695118
Target:  5'- aCGGCGCGC--GUCGcaggGUCuGCGCGCg -3'
miRNA:   3'- -GUCGUGCGacUAGCaa--CAGuCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 1589 0.71 0.695118
Target:  5'- cCAGCGCGCcGcUCGg-GcCAGCGCGCg -3'
miRNA:   3'- -GUCGUGCGaCuAGCaaCaGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 46502 0.71 0.705503
Target:  5'- aCAGCACGCUGAgcaGgc-UCucGCGCACg -3'
miRNA:   3'- -GUCGUGCGACUag-CaacAGu-CGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 17681 0.71 0.726063
Target:  5'- aGGCGCGCaccgccagUGG-CGUUGUCGGC-CACg -3'
miRNA:   3'- gUCGUGCG--------ACUaGCAACAGUCGcGUG- -5'
6388 5' -53.9 NC_001847.1 + 94603 0.71 0.736218
Target:  5'- gCGGCGCGCUGccgcagcacGUCGcgcGUC-GCGCGCa -3'
miRNA:   3'- -GUCGUGCGAC---------UAGCaa-CAGuCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 77617 0.7 0.756229
Target:  5'- gCGGCGcCGCUGggCGagGaCGGCGCGCc -3'
miRNA:   3'- -GUCGU-GCGACuaGCaaCaGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 116660 0.7 0.756229
Target:  5'- gGGCACGCUGGUggccugCGUguggGUCcGGCGCuGCg -3'
miRNA:   3'- gUCGUGCGACUA------GCAa---CAG-UCGCG-UG- -5'
6388 5' -53.9 NC_001847.1 + 27985 0.7 0.766064
Target:  5'- uGGCgccGCGCUGGgccgCGcUG-CAGCGCGCg -3'
miRNA:   3'- gUCG---UGCGACUa---GCaACaGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 30247 0.7 0.766064
Target:  5'- -cGCGuguCGCUGGcggCGUUG-CAGCGCGCc -3'
miRNA:   3'- guCGU---GCGACUa--GCAACaGUCGCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.