Results 21 - 40 of 109 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6388 | 5' | -53.9 | NC_001847.1 | + | 27985 | 0.7 | 0.766064 |
Target: 5'- uGGCgccGCGCUGGgccgCGcUG-CAGCGCGCg -3' miRNA: 3'- gUCG---UGCGACUa---GCaACaGUCGCGUG- -5' |
|||||||
6388 | 5' | -53.9 | NC_001847.1 | + | 74098 | 0.7 | 0.775771 |
Target: 5'- uGGCACGCUGGUgccCGggG-CGGcCGCGCc -3' miRNA: 3'- gUCGUGCGACUA---GCaaCaGUC-GCGUG- -5' |
|||||||
6388 | 5' | -53.9 | NC_001847.1 | + | 77713 | 0.7 | 0.775771 |
Target: 5'- -cGCGCGCUGGUgCGcgcUUGGCGCGCg -3' miRNA: 3'- guCGUGCGACUA-GCaacAGUCGCGUG- -5' |
|||||||
6388 | 5' | -53.9 | NC_001847.1 | + | 63167 | 0.7 | 0.775771 |
Target: 5'- aGGCGCGCacgucGGUCGcgGUC-GCGCGCc -3' miRNA: 3'- gUCGUGCGa----CUAGCaaCAGuCGCGUG- -5' |
|||||||
6388 | 5' | -53.9 | NC_001847.1 | + | 45189 | 0.7 | 0.785342 |
Target: 5'- -cGCGCGCUGGcagUCGUcucgCAGCGCGa -3' miRNA: 3'- guCGUGCGACU---AGCAaca-GUCGCGUg -5' |
|||||||
6388 | 5' | -53.9 | NC_001847.1 | + | 66256 | 0.7 | 0.789129 |
Target: 5'- uCGGCAUGCUGGgccggggaggccucuUCGgcc-CGGCGCACg -3' miRNA: 3'- -GUCGUGCGACU---------------AGCaacaGUCGCGUG- -5' |
|||||||
6388 | 5' | -53.9 | NC_001847.1 | + | 62425 | 0.69 | 0.794765 |
Target: 5'- uCAGCGCGUaggUGAgCGUguuuucGUCGGCGCGg -3' miRNA: 3'- -GUCGUGCG---ACUaGCAa-----CAGUCGCGUg -5' |
|||||||
6388 | 5' | -53.9 | NC_001847.1 | + | 80509 | 0.69 | 0.794765 |
Target: 5'- gAGC-CGCUcGGcauagCGcUGUCGGCGCACg -3' miRNA: 3'- gUCGuGCGA-CUa----GCaACAGUCGCGUG- -5' |
|||||||
6388 | 5' | -53.9 | NC_001847.1 | + | 92712 | 0.69 | 0.798491 |
Target: 5'- gAGCGCGCgccAUCGccgccaccggcgccgUcGUCAGCGCGCg -3' miRNA: 3'- gUCGUGCGac-UAGC---------------AaCAGUCGCGUG- -5' |
|||||||
6388 | 5' | -53.9 | NC_001847.1 | + | 113326 | 0.69 | 0.804031 |
Target: 5'- gCGGCugGUgcaaGUCGgugUGgCAGCGCACg -3' miRNA: 3'- -GUCGugCGac--UAGCa--ACaGUCGCGUG- -5' |
|||||||
6388 | 5' | -53.9 | NC_001847.1 | + | 29689 | 0.69 | 0.811325 |
Target: 5'- gCAGCugaugGCGCUGAUCGcUUGggcgcgagacugCGGCGCGg -3' miRNA: 3'- -GUCG-----UGCGACUAGC-AACa-----------GUCGCGUg -5' |
|||||||
6388 | 5' | -53.9 | NC_001847.1 | + | 35667 | 0.69 | 0.813131 |
Target: 5'- gCGGauCGCGCUGAUC-UUGgccccgagCGGCGCGCu -3' miRNA: 3'- -GUC--GUGCGACUAGcAACa-------GUCGCGUG- -5' |
|||||||
6388 | 5' | -53.9 | NC_001847.1 | + | 98549 | 0.69 | 0.822055 |
Target: 5'- uGGCACGCUGGUCuucuagcgcUGUUA-CGCACg -3' miRNA: 3'- gUCGUGCGACUAGca-------ACAGUcGCGUG- -5' |
|||||||
6388 | 5' | -53.9 | NC_001847.1 | + | 104932 | 0.69 | 0.830795 |
Target: 5'- gGGCGCGCg---CGgcuUCGGCGCGCg -3' miRNA: 3'- gUCGUGCGacuaGCaacAGUCGCGUG- -5' |
|||||||
6388 | 5' | -53.9 | NC_001847.1 | + | 107142 | 0.69 | 0.830795 |
Target: 5'- gCGGCACGCcGcgCGcUG-CAGCGCGg -3' miRNA: 3'- -GUCGUGCGaCuaGCaACaGUCGCGUg -5' |
|||||||
6388 | 5' | -53.9 | NC_001847.1 | + | 70284 | 0.69 | 0.830795 |
Target: 5'- -cGCGCGcCUGG-CGggGUCgcGGCGCGCc -3' miRNA: 3'- guCGUGC-GACUaGCaaCAG--UCGCGUG- -5' |
|||||||
6388 | 5' | -53.9 | NC_001847.1 | + | 77851 | 0.69 | 0.830795 |
Target: 5'- cCAGCGCGCUGGgggcgcucUCGgcccgggaguuuUUGaaCAGCGCGCu -3' miRNA: 3'- -GUCGUGCGACU--------AGC------------AACa-GUCGCGUG- -5' |
|||||||
6388 | 5' | -53.9 | NC_001847.1 | + | 116292 | 0.69 | 0.839342 |
Target: 5'- gCAGCGugcccCGCUGAccCGUg--CGGCGCGCg -3' miRNA: 3'- -GUCGU-----GCGACUa-GCAacaGUCGCGUG- -5' |
|||||||
6388 | 5' | -53.9 | NC_001847.1 | + | 74350 | 0.69 | 0.839342 |
Target: 5'- -cGCGCGCUGGUggcgcgCGUgg-UGGCGCGCg -3' miRNA: 3'- guCGUGCGACUA------GCAacaGUCGCGUG- -5' |
|||||||
6388 | 5' | -53.9 | NC_001847.1 | + | 30510 | 0.69 | 0.839342 |
Target: 5'- gGGCGCGCcgGA-CGUgagcgcgcUCGGCGCGCa -3' miRNA: 3'- gUCGUGCGa-CUaGCAac------AGUCGCGUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home