miRNA display CGI


Results 41 - 60 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6388 5' -53.9 NC_001847.1 + 116292 0.69 0.839342
Target:  5'- gCAGCGugcccCGCUGAccCGUg--CGGCGCGCg -3'
miRNA:   3'- -GUCGU-----GCGACUa-GCAacaGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 72052 0.68 0.847688
Target:  5'- -cGCACGCg---CGgcgGUUGGCGCGCa -3'
miRNA:   3'- guCGUGCGacuaGCaa-CAGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 31206 0.68 0.847688
Target:  5'- -uGCucuCGCUGAgggcgCGgcGUgGGCGCGCg -3'
miRNA:   3'- guCGu--GCGACUa----GCaaCAgUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 69497 0.68 0.855825
Target:  5'- gGGCGCGCacgcGGcCGUUGgCGGCGCAg -3'
miRNA:   3'- gUCGUGCGa---CUaGCAACaGUCGCGUg -5'
6388 5' -53.9 NC_001847.1 + 43717 0.68 0.855825
Target:  5'- -cGCGCGCUGcgCGcggacgUGgUGGCGCACu -3'
miRNA:   3'- guCGUGCGACuaGCa-----ACaGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 101176 0.68 0.855825
Target:  5'- cCAGCGCGCc---CGgcGcCAGCGCGCu -3'
miRNA:   3'- -GUCGUGCGacuaGCaaCaGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 26758 0.68 0.855825
Target:  5'- gAGCGCgGgUGcgCGgccugGUCAGUGCGCg -3'
miRNA:   3'- gUCGUG-CgACuaGCaa---CAGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 71881 0.68 0.860604
Target:  5'- gAGCGCGCggcccGUUGUUGUCuuucccagcccguGCGCGCc -3'
miRNA:   3'- gUCGUGCGac---UAGCAACAGu------------CGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 12393 0.68 0.863745
Target:  5'- gGGCGCGUgUGGUCGgUGaCcGCGCGCa -3'
miRNA:   3'- gUCGUGCG-ACUAGCaACaGuCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 41274 0.68 0.863745
Target:  5'- cCGGCGCGC-GGUCag---CAGCGCGCc -3'
miRNA:   3'- -GUCGUGCGaCUAGcaacaGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 9809 0.68 0.863745
Target:  5'- cCGGC-CGCUGG-CGU--UCAGCGCGg -3'
miRNA:   3'- -GUCGuGCGACUaGCAacAGUCGCGUg -5'
6388 5' -53.9 NC_001847.1 + 103760 0.68 0.871443
Target:  5'- -cGCGCGCUGGgacUUGggUGcUCAGgGCGCg -3'
miRNA:   3'- guCGUGCGACU---AGCa-AC-AGUCgCGUG- -5'
6388 5' -53.9 NC_001847.1 + 4802 0.68 0.871443
Target:  5'- aCGGCAUGCUGGaCGa----GGCGCGCg -3'
miRNA:   3'- -GUCGUGCGACUaGCaacagUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 85983 0.68 0.871443
Target:  5'- cCGGCGCG-UGAcCGUgGUCcGCGCGCc -3'
miRNA:   3'- -GUCGUGCgACUaGCAaCAGuCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 101551 0.68 0.871443
Target:  5'- cCAGCugGCgcagGA-CGUcGUCGGCaccGCGCa -3'
miRNA:   3'- -GUCGugCGa---CUaGCAaCAGUCG---CGUG- -5'
6388 5' -53.9 NC_001847.1 + 23802 0.68 0.876695
Target:  5'- cCAGCGCGgcggccaccgaccaCUGcUCGcgGUcCAGCGCGCg -3'
miRNA:   3'- -GUCGUGC--------------GACuAGCaaCA-GUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 53295 0.68 0.878911
Target:  5'- -cGCGCGCUcGAUCGccGcCAGUGCGg -3'
miRNA:   3'- guCGUGCGA-CUAGCaaCaGUCGCGUg -5'
6388 5' -53.9 NC_001847.1 + 37682 0.68 0.878911
Target:  5'- uUAGCGCGCggcccugGcgCGgcugCGGCGCGCg -3'
miRNA:   3'- -GUCGUGCGa------CuaGCaacaGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 54584 0.67 0.886144
Target:  5'- -cGCGgGCUGggCGgcgcUGgCGGCGCGCg -3'
miRNA:   3'- guCGUgCGACuaGCa---ACaGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 80149 0.67 0.886144
Target:  5'- cCAGCgccgccaugACGCUGugguacgCGUUG-CAGUGCGCc -3'
miRNA:   3'- -GUCG---------UGCGACua-----GCAACaGUCGCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.