Results 61 - 80 of 109 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6388 | 5' | -53.9 | NC_001847.1 | + | 80149 | 0.67 | 0.886144 |
Target: 5'- cCAGCgccgccaugACGCUGugguacgCGUUG-CAGUGCGCc -3' miRNA: 3'- -GUCG---------UGCGACua-----GCAACaGUCGCGUG- -5' |
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6388 | 5' | -53.9 | NC_001847.1 | + | 99692 | 0.67 | 0.890369 |
Target: 5'- gCGGCGCGCgGcgCGggccgccguaaaGUCAGCGCGa -3' miRNA: 3'- -GUCGUGCGaCuaGCaa----------CAGUCGCGUg -5' |
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6388 | 5' | -53.9 | NC_001847.1 | + | 30740 | 0.67 | 0.893138 |
Target: 5'- -cGCGCGCUGGccCGag--CGGCGCGCu -3' miRNA: 3'- guCGUGCGACUa-GCaacaGUCGCGUG- -5' |
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6388 | 5' | -53.9 | NC_001847.1 | + | 133553 | 0.67 | 0.893138 |
Target: 5'- -cGCGCGCUGGccCGag--CGGCGCGCu -3' miRNA: 3'- guCGUGCGACUa-GCaacaGUCGCGUG- -5' |
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6388 | 5' | -53.9 | NC_001847.1 | + | 31001 | 0.67 | 0.893138 |
Target: 5'- gCGGCACcaUGuccggCGUUGcCGGCGCGCg -3' miRNA: 3'- -GUCGUGcgACua---GCAACaGUCGCGUG- -5' |
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6388 | 5' | -53.9 | NC_001847.1 | + | 47688 | 0.67 | 0.893138 |
Target: 5'- gGGCGCGCgccgcggGGcCGUUG--AGCGCGCg -3' miRNA: 3'- gUCGUGCGa------CUaGCAACagUCGCGUG- -5' |
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6388 | 5' | -53.9 | NC_001847.1 | + | 46193 | 0.67 | 0.893138 |
Target: 5'- gGGCGCGgaGAggUCGgcgUGUCcgucGCGCAUg -3' miRNA: 3'- gUCGUGCgaCU--AGCa--ACAGu---CGCGUG- -5' |
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6388 | 5' | -53.9 | NC_001847.1 | + | 36389 | 0.67 | 0.893138 |
Target: 5'- gCAGCGCGCgccgCGgcGaCGGUGCACu -3' miRNA: 3'- -GUCGUGCGacuaGCaaCaGUCGCGUG- -5' |
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6388 | 5' | -53.9 | NC_001847.1 | + | 18816 | 0.67 | 0.899887 |
Target: 5'- cCAGCGCGCgcaUGGgcaCGgcGUCcucGCGCGCg -3' miRNA: 3'- -GUCGUGCG---ACUa--GCaaCAGu--CGCGUG- -5' |
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6388 | 5' | -53.9 | NC_001847.1 | + | 33317 | 0.67 | 0.899887 |
Target: 5'- gCAGCcUGUUGuUCGUgg-CGGCGCGCu -3' miRNA: 3'- -GUCGuGCGACuAGCAacaGUCGCGUG- -5' |
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6388 | 5' | -53.9 | NC_001847.1 | + | 104889 | 0.67 | 0.899887 |
Target: 5'- gCGGCGCGCUGcaaCGccGcCAGCGaCACg -3' miRNA: 3'- -GUCGUGCGACua-GCaaCaGUCGC-GUG- -5' |
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6388 | 5' | -53.9 | NC_001847.1 | + | 37926 | 0.67 | 0.906388 |
Target: 5'- aCGGCGCaGCUGGagcaGcUGUCGGCGCu- -3' miRNA: 3'- -GUCGUG-CGACUag--CaACAGUCGCGug -5' |
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6388 | 5' | -53.9 | NC_001847.1 | + | 56727 | 0.67 | 0.912639 |
Target: 5'- uCAGCGCGCg---CGccagCAGCGCGCc -3' miRNA: 3'- -GUCGUGCGacuaGCaacaGUCGCGUG- -5' |
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6388 | 5' | -53.9 | NC_001847.1 | + | 97009 | 0.67 | 0.912639 |
Target: 5'- uCGGCgGCGCUGGccgCGggGggCAGCGCGu -3' miRNA: 3'- -GUCG-UGCGACUa--GCaaCa-GUCGCGUg -5' |
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6388 | 5' | -53.9 | NC_001847.1 | + | 90227 | 0.67 | 0.912639 |
Target: 5'- aCAGCACGCg---CGc-GUC-GCGCACg -3' miRNA: 3'- -GUCGUGCGacuaGCaaCAGuCGCGUG- -5' |
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6388 | 5' | -53.9 | NC_001847.1 | + | 82829 | 0.67 | 0.912639 |
Target: 5'- aCGGCGCGacccGGUCGUUugccgcgCGGCGUACg -3' miRNA: 3'- -GUCGUGCga--CUAGCAAca-----GUCGCGUG- -5' |
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6388 | 5' | -53.9 | NC_001847.1 | + | 69023 | 0.66 | 0.918636 |
Target: 5'- gAGC-UGCUGcggugcGUCGcgcUGUCGGCGUACg -3' miRNA: 3'- gUCGuGCGAC------UAGCa--ACAGUCGCGUG- -5' |
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6388 | 5' | -53.9 | NC_001847.1 | + | 86432 | 0.66 | 0.918636 |
Target: 5'- uGGCgGCGCUGcgCGgcGcgggCAGCGUGCa -3' miRNA: 3'- gUCG-UGCGACuaGCaaCa---GUCGCGUG- -5' |
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6388 | 5' | -53.9 | NC_001847.1 | + | 29339 | 0.66 | 0.924379 |
Target: 5'- gAGCGCGCg---CGgcucCAGCGCGCg -3' miRNA: 3'- gUCGUGCGacuaGCaacaGUCGCGUG- -5' |
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6388 | 5' | -53.9 | NC_001847.1 | + | 132152 | 0.66 | 0.924379 |
Target: 5'- gAGCGCGCg---CGgcucCAGCGCGCg -3' miRNA: 3'- gUCGUGCGacuaGCaacaGUCGCGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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