Results 101 - 109 of 109 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 6388 | 5' | -53.9 | NC_001847.1 | + | 81864 | 0.66 | 0.944799 |
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Target: 5'- gAGCGCGCguucGUCGgacUCGGcCGCGCg -3' miRNA: 3'- gUCGUGCGac--UAGCaacAGUC-GCGUG- -5' |
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| 6388 | 5' | -53.9 | NC_001847.1 | + | 106616 | 0.66 | 0.944799 |
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Target: 5'- -cGCACGCggccGggCGgcGgCGGCGCGCu -3' miRNA: 3'- guCGUGCGa---CuaGCaaCaGUCGCGUG- -5' |
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| 6388 | 5' | -53.9 | NC_001847.1 | + | 3803 | 0.66 | 0.944799 |
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Target: 5'- -cGCACGCggccGggCGgcGgCGGCGCGCu -3' miRNA: 3'- guCGUGCGa---CuaGCaaCaGUCGCGUG- -5' |
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| 6388 | 5' | -53.9 | NC_001847.1 | + | 53720 | 0.66 | 0.944799 |
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Target: 5'- gCGGCuCGCgGggCGga-UCGGCGCGCg -3' miRNA: 3'- -GUCGuGCGaCuaGCaacAGUCGCGUG- -5' |
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| 6388 | 5' | -53.9 | NC_001847.1 | + | 47855 | 0.66 | 0.944799 |
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Target: 5'- uCGGC-CGCggccgCGggccGUCGGCGCGCa -3' miRNA: 3'- -GUCGuGCGacua-GCaa--CAGUCGCGUG- -5' |
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| 6388 | 5' | -53.9 | NC_001847.1 | + | 57305 | 0.66 | 0.944799 |
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Target: 5'- cCAGCGCGCUGGc------CAGUGCGCg -3' miRNA: 3'- -GUCGUGCGACUagcaacaGUCGCGUG- -5' |
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| 6388 | 5' | -53.9 | NC_001847.1 | + | 77285 | 0.66 | 0.944799 |
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Target: 5'- gAGCGCGCgcguggUGAUCGg-GUaCAGCGCc- -3' miRNA: 3'- gUCGUGCG------ACUAGCaaCA-GUCGCGug -5' |
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| 6388 | 5' | -53.9 | NC_001847.1 | + | 113932 | 0.66 | 0.944799 |
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Target: 5'- gCAGCGCGC-GGUCGcgG-CGGCGUc- -3' miRNA: 3'- -GUCGUGCGaCUAGCaaCaGUCGCGug -5' |
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| 6388 | 5' | -53.9 | NC_001847.1 | + | 19628 | 0.66 | 0.944799 |
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Target: 5'- cCGGgGCGC----CGgcGUCGGCGCGCg -3' miRNA: 3'- -GUCgUGCGacuaGCaaCAGUCGCGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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