miRNA display CGI


Results 21 - 40 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6388 5' -53.9 NC_001847.1 + 33966 0.66 0.929866
Target:  5'- gAGCGCGCUGG-CGccg--GGCGCGCu -3'
miRNA:   3'- gUCGUGCGACUaGCaacagUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 35496 0.66 0.929866
Target:  5'- gCGGCGCGCg---CGgaGgccaCGGCGCGCg -3'
miRNA:   3'- -GUCGUGCGacuaGCaaCa---GUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 124937 0.66 0.929866
Target:  5'- gGGCGCGCccUGGgcccggCGgcGgcggCGGCGCGCa -3'
miRNA:   3'- gUCGUGCG--ACUa-----GCaaCa---GUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 22124 0.66 0.929866
Target:  5'- gGGCGCGCccUGGgcccggCGgcGgcggCGGCGCGCa -3'
miRNA:   3'- gUCGUGCG--ACUa-----GCaaCa---GUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 97445 0.66 0.929866
Target:  5'- gCAGCGCGCacgUGA-CGagGUCcAGCGCGu -3'
miRNA:   3'- -GUCGUGCG---ACUaGCaaCAG-UCGCGUg -5'
6388 5' -53.9 NC_001847.1 + 29339 0.66 0.924379
Target:  5'- gAGCGCGCg---CGgcucCAGCGCGCg -3'
miRNA:   3'- gUCGUGCGacuaGCaacaGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 132152 0.66 0.924379
Target:  5'- gAGCGCGCg---CGgcucCAGCGCGCg -3'
miRNA:   3'- gUCGUGCGacuaGCaacaGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 12811 0.66 0.924379
Target:  5'- uCAGCGCGUgGcgCGcgagCGGCGCGCu -3'
miRNA:   3'- -GUCGUGCGaCuaGCaacaGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 46095 0.66 0.924379
Target:  5'- cCGGCGCGCcaUGccGUCGcc--CAGCGCGCa -3'
miRNA:   3'- -GUCGUGCG--AC--UAGCaacaGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 33813 0.66 0.924379
Target:  5'- cCGGCGCGCUGGagCGgc-UguGCGCAg -3'
miRNA:   3'- -GUCGUGCGACUa-GCaacAguCGCGUg -5'
6388 5' -53.9 NC_001847.1 + 6799 0.66 0.924379
Target:  5'- cCAGCAgCGCgUGAUCa-UGUCcGCGUGCa -3'
miRNA:   3'- -GUCGU-GCG-ACUAGcaACAGuCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 86432 0.66 0.918636
Target:  5'- uGGCgGCGCUGcgCGgcGcgggCAGCGUGCa -3'
miRNA:   3'- gUCG-UGCGACuaGCaaCa---GUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 69023 0.66 0.918636
Target:  5'- gAGC-UGCUGcggugcGUCGcgcUGUCGGCGUACg -3'
miRNA:   3'- gUCGuGCGAC------UAGCa--ACAGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 90227 0.67 0.912639
Target:  5'- aCAGCACGCg---CGc-GUC-GCGCACg -3'
miRNA:   3'- -GUCGUGCGacuaGCaaCAGuCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 97009 0.67 0.912639
Target:  5'- uCGGCgGCGCUGGccgCGggGggCAGCGCGu -3'
miRNA:   3'- -GUCG-UGCGACUa--GCaaCa-GUCGCGUg -5'
6388 5' -53.9 NC_001847.1 + 82829 0.67 0.912639
Target:  5'- aCGGCGCGacccGGUCGUUugccgcgCGGCGUACg -3'
miRNA:   3'- -GUCGUGCga--CUAGCAAca-----GUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 56727 0.67 0.912639
Target:  5'- uCAGCGCGCg---CGccagCAGCGCGCc -3'
miRNA:   3'- -GUCGUGCGacuaGCaacaGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 37926 0.67 0.906388
Target:  5'- aCGGCGCaGCUGGagcaGcUGUCGGCGCu- -3'
miRNA:   3'- -GUCGUG-CGACUag--CaACAGUCGCGug -5'
6388 5' -53.9 NC_001847.1 + 18816 0.67 0.899887
Target:  5'- cCAGCGCGCgcaUGGgcaCGgcGUCcucGCGCGCg -3'
miRNA:   3'- -GUCGUGCG---ACUa--GCaaCAGu--CGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 104889 0.67 0.899887
Target:  5'- gCGGCGCGCUGcaaCGccGcCAGCGaCACg -3'
miRNA:   3'- -GUCGUGCGACua-GCaaCaGUCGC-GUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.