miRNA display CGI


Results 41 - 60 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6388 5' -53.9 NC_001847.1 + 18816 0.67 0.899887
Target:  5'- cCAGCGCGCgcaUGGgcaCGgcGUCcucGCGCGCg -3'
miRNA:   3'- -GUCGUGCG---ACUa--GCaaCAGu--CGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 47688 0.67 0.893138
Target:  5'- gGGCGCGCgccgcggGGcCGUUG--AGCGCGCg -3'
miRNA:   3'- gUCGUGCGa------CUaGCAACagUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 46193 0.67 0.893138
Target:  5'- gGGCGCGgaGAggUCGgcgUGUCcgucGCGCAUg -3'
miRNA:   3'- gUCGUGCgaCU--AGCa--ACAGu---CGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 36389 0.67 0.893138
Target:  5'- gCAGCGCGCgccgCGgcGaCGGUGCACu -3'
miRNA:   3'- -GUCGUGCGacuaGCaaCaGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 31001 0.67 0.893138
Target:  5'- gCGGCACcaUGuccggCGUUGcCGGCGCGCg -3'
miRNA:   3'- -GUCGUGcgACua---GCAACaGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 133553 0.67 0.893138
Target:  5'- -cGCGCGCUGGccCGag--CGGCGCGCu -3'
miRNA:   3'- guCGUGCGACUa-GCaacaGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 30740 0.67 0.893138
Target:  5'- -cGCGCGCUGGccCGag--CGGCGCGCu -3'
miRNA:   3'- guCGUGCGACUa-GCaacaGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 99692 0.67 0.890369
Target:  5'- gCGGCGCGCgGcgCGggccgccguaaaGUCAGCGCGa -3'
miRNA:   3'- -GUCGUGCGaCuaGCaa----------CAGUCGCGUg -5'
6388 5' -53.9 NC_001847.1 + 54584 0.67 0.886144
Target:  5'- -cGCGgGCUGggCGgcgcUGgCGGCGCGCg -3'
miRNA:   3'- guCGUgCGACuaGCa---ACaGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 80149 0.67 0.886144
Target:  5'- cCAGCgccgccaugACGCUGugguacgCGUUG-CAGUGCGCc -3'
miRNA:   3'- -GUCG---------UGCGACua-----GCAACaGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 99464 0.67 0.886144
Target:  5'- gCAGCGCGCcGcUCGggGccaagaUCAGCGCGa -3'
miRNA:   3'- -GUCGUGCGaCuAGCaaC------AGUCGCGUg -5'
6388 5' -53.9 NC_001847.1 + 37682 0.68 0.878911
Target:  5'- uUAGCGCGCggcccugGcgCGgcugCGGCGCGCg -3'
miRNA:   3'- -GUCGUGCGa------CuaGCaacaGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 53295 0.68 0.878911
Target:  5'- -cGCGCGCUcGAUCGccGcCAGUGCGg -3'
miRNA:   3'- guCGUGCGA-CUAGCaaCaGUCGCGUg -5'
6388 5' -53.9 NC_001847.1 + 23802 0.68 0.876695
Target:  5'- cCAGCGCGgcggccaccgaccaCUGcUCGcgGUcCAGCGCGCg -3'
miRNA:   3'- -GUCGUGC--------------GACuAGCaaCA-GUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 103760 0.68 0.871443
Target:  5'- -cGCGCGCUGGgacUUGggUGcUCAGgGCGCg -3'
miRNA:   3'- guCGUGCGACU---AGCa-AC-AGUCgCGUG- -5'
6388 5' -53.9 NC_001847.1 + 85983 0.68 0.871443
Target:  5'- cCGGCGCG-UGAcCGUgGUCcGCGCGCc -3'
miRNA:   3'- -GUCGUGCgACUaGCAaCAGuCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 4802 0.68 0.871443
Target:  5'- aCGGCAUGCUGGaCGa----GGCGCGCg -3'
miRNA:   3'- -GUCGUGCGACUaGCaacagUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 101551 0.68 0.871443
Target:  5'- cCAGCugGCgcagGA-CGUcGUCGGCaccGCGCa -3'
miRNA:   3'- -GUCGugCGa---CUaGCAaCAGUCG---CGUG- -5'
6388 5' -53.9 NC_001847.1 + 9809 0.68 0.863745
Target:  5'- cCGGC-CGCUGG-CGU--UCAGCGCGg -3'
miRNA:   3'- -GUCGuGCGACUaGCAacAGUCGCGUg -5'
6388 5' -53.9 NC_001847.1 + 41274 0.68 0.863745
Target:  5'- cCGGCGCGC-GGUCag---CAGCGCGCc -3'
miRNA:   3'- -GUCGUGCGaCUAGcaacaGUCGCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.