miRNA display CGI


Results 1 - 20 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6388 5' -53.9 NC_001847.1 + 1589 0.71 0.695118
Target:  5'- cCAGCGCGCcGcUCGg-GcCAGCGCGCg -3'
miRNA:   3'- -GUCGUGCGaCuAGCaaCaGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 3803 0.66 0.944799
Target:  5'- -cGCACGCggccGggCGgcGgCGGCGCGCu -3'
miRNA:   3'- guCGUGCGa---CuaGCaaCaGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 4802 0.68 0.871443
Target:  5'- aCGGCAUGCUGGaCGa----GGCGCGCg -3'
miRNA:   3'- -GUCGUGCGACUaGCaacagUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 6799 0.66 0.924379
Target:  5'- cCAGCAgCGCgUGAUCa-UGUCcGCGUGCa -3'
miRNA:   3'- -GUCGU-GCG-ACUAGcaACAGuCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 9809 0.68 0.863745
Target:  5'- cCGGC-CGCUGG-CGU--UCAGCGCGg -3'
miRNA:   3'- -GUCGuGCGACUaGCAacAGUCGCGUg -5'
6388 5' -53.9 NC_001847.1 + 12393 0.68 0.863745
Target:  5'- gGGCGCGUgUGGUCGgUGaCcGCGCGCa -3'
miRNA:   3'- gUCGUGCG-ACUAGCaACaGuCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 12811 0.66 0.924379
Target:  5'- uCAGCGCGUgGcgCGcgagCGGCGCGCu -3'
miRNA:   3'- -GUCGUGCGaCuaGCaacaGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 14020 0.66 0.940075
Target:  5'- gCAGCAgGCgg--CGgcG-CAGCGCGCa -3'
miRNA:   3'- -GUCGUgCGacuaGCaaCaGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 14450 0.66 0.940075
Target:  5'- gAGCGCGCggccgCGcUGcUCGGCGUGCg -3'
miRNA:   3'- gUCGUGCGacua-GCaAC-AGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 15449 0.72 0.631968
Target:  5'- uGGCGCuGCUGAaaagCGUgg-CGGCGCACg -3'
miRNA:   3'- gUCGUG-CGACUa---GCAacaGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 17681 0.71 0.726063
Target:  5'- aGGCGCGCaccgccagUGG-CGUUGUCGGC-CACg -3'
miRNA:   3'- gUCGUGCG--------ACUaGCAACAGUCGcGUG- -5'
6388 5' -53.9 NC_001847.1 + 18214 0.66 0.935098
Target:  5'- gGGCugGCgGucucUCGgcgGUCGuGCGCGCg -3'
miRNA:   3'- gUCGugCGaCu---AGCaa-CAGU-CGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 18600 0.76 0.420998
Target:  5'- uUAGCGCGCcGuccgCGgcGUCGGCGCGCg -3'
miRNA:   3'- -GUCGUGCGaCua--GCaaCAGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 18816 0.67 0.899887
Target:  5'- cCAGCGCGCgcaUGGgcaCGgcGUCcucGCGCGCg -3'
miRNA:   3'- -GUCGUGCG---ACUa--GCaaCAGu--CGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 19628 0.66 0.944799
Target:  5'- cCGGgGCGC----CGgcGUCGGCGCGCg -3'
miRNA:   3'- -GUCgUGCGacuaGCaaCAGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 22124 0.66 0.929866
Target:  5'- gGGCGCGCccUGGgcccggCGgcGgcggCGGCGCGCa -3'
miRNA:   3'- gUCGUGCG--ACUa-----GCaaCa---GUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 23802 0.68 0.876695
Target:  5'- cCAGCGCGgcggccaccgaccaCUGcUCGcgGUcCAGCGCGCg -3'
miRNA:   3'- -GUCGUGC--------------GACuAGCaaCA-GUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 26758 0.68 0.855825
Target:  5'- gAGCGCgGgUGcgCGgccugGUCAGUGCGCg -3'
miRNA:   3'- gUCGUG-CgACuaGCaa---CAGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 27985 0.7 0.766064
Target:  5'- uGGCgccGCGCUGGgccgCGcUG-CAGCGCGCg -3'
miRNA:   3'- gUCG---UGCGACUa---GCaACaGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 29339 0.66 0.924379
Target:  5'- gAGCGCGCg---CGgcucCAGCGCGCg -3'
miRNA:   3'- gUCGUGCGacuaGCaacaGUCGCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.