miRNA display CGI


Results 21 - 40 of 109 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6388 5' -53.9 NC_001847.1 + 29689 0.69 0.811325
Target:  5'- gCAGCugaugGCGCUGAUCGcUUGggcgcgagacugCGGCGCGg -3'
miRNA:   3'- -GUCG-----UGCGACUAGC-AACa-----------GUCGCGUg -5'
6388 5' -53.9 NC_001847.1 + 30247 0.7 0.766064
Target:  5'- -cGCGuguCGCUGGcggCGUUG-CAGCGCGCc -3'
miRNA:   3'- guCGU---GCGACUa--GCAACaGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 30510 0.69 0.839342
Target:  5'- gGGCGCGCcgGA-CGUgagcgcgcUCGGCGCGCa -3'
miRNA:   3'- gUCGUGCGa-CUaGCAac------AGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 30740 0.67 0.893138
Target:  5'- -cGCGCGCUGGccCGag--CGGCGCGCu -3'
miRNA:   3'- guCGUGCGACUa-GCaacaGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 31001 0.67 0.893138
Target:  5'- gCGGCACcaUGuccggCGUUGcCGGCGCGCg -3'
miRNA:   3'- -GUCGUGcgACua---GCAACaGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 31206 0.68 0.847688
Target:  5'- -uGCucuCGCUGAgggcgCGgcGUgGGCGCGCg -3'
miRNA:   3'- guCGu--GCGACUa----GCaaCAgUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 33317 0.67 0.899887
Target:  5'- gCAGCcUGUUGuUCGUgg-CGGCGCGCu -3'
miRNA:   3'- -GUCGuGCGACuAGCAacaGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 33813 0.66 0.924379
Target:  5'- cCGGCGCGCUGGagCGgc-UguGCGCAg -3'
miRNA:   3'- -GUCGUGCGACUa-GCaacAguCGCGUg -5'
6388 5' -53.9 NC_001847.1 + 33966 0.66 0.929866
Target:  5'- gAGCGCGCUGG-CGccg--GGCGCGCu -3'
miRNA:   3'- gUCGUGCGACUaGCaacagUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 34155 0.66 0.935098
Target:  5'- gAGCGCGCUGcgCGagG-CGGCugagGCGCu -3'
miRNA:   3'- gUCGUGCGACuaGCaaCaGUCG----CGUG- -5'
6388 5' -53.9 NC_001847.1 + 34766 0.66 0.940075
Target:  5'- uGGCGCgGCUGcgCGccgcGgccgCGGCGCGCg -3'
miRNA:   3'- gUCGUG-CGACuaGCaa--Ca---GUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 35496 0.66 0.929866
Target:  5'- gCGGCGCGCg---CGgaGgccaCGGCGCGCg -3'
miRNA:   3'- -GUCGUGCGacuaGCaaCa---GUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 35623 0.71 0.684677
Target:  5'- aAGCGCGCgGcgCGggGcUCGGCGCAa -3'
miRNA:   3'- gUCGUGCGaCuaGCaaC-AGUCGCGUg -5'
6388 5' -53.9 NC_001847.1 + 35667 0.69 0.813131
Target:  5'- gCGGauCGCGCUGAUC-UUGgccccgagCGGCGCGCu -3'
miRNA:   3'- -GUC--GUGCGACUAGcAACa-------GUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 36389 0.67 0.893138
Target:  5'- gCAGCGCGCgccgCGgcGaCGGUGCACu -3'
miRNA:   3'- -GUCGUGCGacuaGCaaCaGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 37682 0.68 0.878911
Target:  5'- uUAGCGCGCggcccugGcgCGgcugCGGCGCGCg -3'
miRNA:   3'- -GUCGUGCGa------CuaGCaacaGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 37926 0.67 0.906388
Target:  5'- aCGGCGCaGCUGGagcaGcUGUCGGCGCu- -3'
miRNA:   3'- -GUCGUG-CGACUag--CaACAGUCGCGug -5'
6388 5' -53.9 NC_001847.1 + 41274 0.68 0.863745
Target:  5'- cCGGCGCGC-GGUCag---CAGCGCGCc -3'
miRNA:   3'- -GUCGUGCGaCUAGcaacaGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 43717 0.68 0.855825
Target:  5'- -cGCGCGCUGcgCGcggacgUGgUGGCGCACu -3'
miRNA:   3'- guCGUGCGACuaGCa-----ACaGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 45189 0.7 0.785342
Target:  5'- -cGCGCGCUGGcagUCGUcucgCAGCGCGa -3'
miRNA:   3'- guCGUGCGACU---AGCAaca-GUCGCGUg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.