Results 61 - 80 of 109 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6388 | 5' | -53.9 | NC_001847.1 | + | 69497 | 0.68 | 0.855825 |
Target: 5'- gGGCGCGCacgcGGcCGUUGgCGGCGCAg -3' miRNA: 3'- gUCGUGCGa---CUaGCAACaGUCGCGUg -5' |
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6388 | 5' | -53.9 | NC_001847.1 | + | 70260 | 0.76 | 0.458312 |
Target: 5'- gGGCGCGCgg--CGUUGcucUCGGCGCGCg -3' miRNA: 3'- gUCGUGCGacuaGCAAC---AGUCGCGUG- -5' |
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6388 | 5' | -53.9 | NC_001847.1 | + | 70284 | 0.69 | 0.830795 |
Target: 5'- -cGCGCGcCUGG-CGggGUCgcGGCGCGCc -3' miRNA: 3'- guCGUGC-GACUaGCaaCAG--UCGCGUG- -5' |
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6388 | 5' | -53.9 | NC_001847.1 | + | 70996 | 0.75 | 0.487422 |
Target: 5'- aCGGCGCGCUGAcggagguuUCGU--UCGGCGCGg -3' miRNA: 3'- -GUCGUGCGACU--------AGCAacAGUCGCGUg -5' |
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6388 | 5' | -53.9 | NC_001847.1 | + | 71881 | 0.68 | 0.860604 |
Target: 5'- gAGCGCGCggcccGUUGUUGUCuuucccagcccguGCGCGCc -3' miRNA: 3'- gUCGUGCGac---UAGCAACAGu------------CGCGUG- -5' |
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6388 | 5' | -53.9 | NC_001847.1 | + | 72052 | 0.68 | 0.847688 |
Target: 5'- -cGCACGCg---CGgcgGUUGGCGCGCa -3' miRNA: 3'- guCGUGCGacuaGCaa-CAGUCGCGUG- -5' |
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6388 | 5' | -53.9 | NC_001847.1 | + | 74098 | 0.7 | 0.775771 |
Target: 5'- uGGCACGCUGGUgccCGggG-CGGcCGCGCc -3' miRNA: 3'- gUCGUGCGACUA---GCaaCaGUC-GCGUG- -5' |
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6388 | 5' | -53.9 | NC_001847.1 | + | 74350 | 0.69 | 0.839342 |
Target: 5'- -cGCGCGCUGGUggcgcgCGUgg-UGGCGCGCg -3' miRNA: 3'- guCGUGCGACUA------GCAacaGUCGCGUG- -5' |
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6388 | 5' | -53.9 | NC_001847.1 | + | 74751 | 0.74 | 0.517376 |
Target: 5'- cCGGCugGgaGA-CGcgGUCGGCGCGCg -3' miRNA: 3'- -GUCGugCgaCUaGCaaCAGUCGCGUG- -5' |
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6388 | 5' | -53.9 | NC_001847.1 | + | 77285 | 0.66 | 0.944799 |
Target: 5'- gAGCGCGCgcguggUGAUCGg-GUaCAGCGCc- -3' miRNA: 3'- gUCGUGCG------ACUAGCaaCA-GUCGCGug -5' |
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6388 | 5' | -53.9 | NC_001847.1 | + | 77617 | 0.7 | 0.756229 |
Target: 5'- gCGGCGcCGCUGggCGagGaCGGCGCGCc -3' miRNA: 3'- -GUCGU-GCGACuaGCaaCaGUCGCGUG- -5' |
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6388 | 5' | -53.9 | NC_001847.1 | + | 77713 | 0.7 | 0.775771 |
Target: 5'- -cGCGCGCUGGUgCGcgcUUGGCGCGCg -3' miRNA: 3'- guCGUGCGACUA-GCaacAGUCGCGUG- -5' |
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6388 | 5' | -53.9 | NC_001847.1 | + | 77851 | 0.69 | 0.830795 |
Target: 5'- cCAGCGCGCUGGgggcgcucUCGgcccgggaguuuUUGaaCAGCGCGCu -3' miRNA: 3'- -GUCGUGCGACU--------AGC------------AACa-GUCGCGUG- -5' |
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6388 | 5' | -53.9 | NC_001847.1 | + | 80149 | 0.67 | 0.886144 |
Target: 5'- cCAGCgccgccaugACGCUGugguacgCGUUG-CAGUGCGCc -3' miRNA: 3'- -GUCG---------UGCGACua-----GCAACaGUCGCGUG- -5' |
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6388 | 5' | -53.9 | NC_001847.1 | + | 80509 | 0.69 | 0.794765 |
Target: 5'- gAGC-CGCUcGGcauagCGcUGUCGGCGCACg -3' miRNA: 3'- gUCGuGCGA-CUa----GCaACAGUCGCGUG- -5' |
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6388 | 5' | -53.9 | NC_001847.1 | + | 81864 | 0.66 | 0.944799 |
Target: 5'- gAGCGCGCguucGUCGgacUCGGcCGCGCg -3' miRNA: 3'- gUCGUGCGac--UAGCaacAGUC-GCGUG- -5' |
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6388 | 5' | -53.9 | NC_001847.1 | + | 82829 | 0.67 | 0.912639 |
Target: 5'- aCGGCGCGacccGGUCGUUugccgcgCGGCGUACg -3' miRNA: 3'- -GUCGUGCga--CUAGCAAca-----GUCGCGUG- -5' |
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6388 | 5' | -53.9 | NC_001847.1 | + | 85983 | 0.68 | 0.871443 |
Target: 5'- cCGGCGCG-UGAcCGUgGUCcGCGCGCc -3' miRNA: 3'- -GUCGUGCgACUaGCAaCAGuCGCGUG- -5' |
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6388 | 5' | -53.9 | NC_001847.1 | + | 86432 | 0.66 | 0.918636 |
Target: 5'- uGGCgGCGCUGcgCGgcGcgggCAGCGUGCa -3' miRNA: 3'- gUCG-UGCGACuaGCaaCa---GUCGCGUG- -5' |
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6388 | 5' | -53.9 | NC_001847.1 | + | 90227 | 0.67 | 0.912639 |
Target: 5'- aCAGCACGCg---CGc-GUC-GCGCACg -3' miRNA: 3'- -GUCGUGCGacuaGCaaCAGuCGCGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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