Results 81 - 100 of 109 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6388 | 5' | -53.9 | NC_001847.1 | + | 92712 | 0.69 | 0.798491 |
Target: 5'- gAGCGCGCgccAUCGccgccaccggcgccgUcGUCAGCGCGCg -3' miRNA: 3'- gUCGUGCGac-UAGC---------------AaCAGUCGCGUG- -5' |
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6388 | 5' | -53.9 | NC_001847.1 | + | 94358 | 0.66 | 0.940075 |
Target: 5'- gAGgACGCUGGcgcggCGgcGUCugccGCGCGCa -3' miRNA: 3'- gUCgUGCGACUa----GCaaCAGu---CGCGUG- -5' |
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6388 | 5' | -53.9 | NC_001847.1 | + | 94603 | 0.71 | 0.736218 |
Target: 5'- gCGGCGCGCUGccgcagcacGUCGcgcGUC-GCGCGCa -3' miRNA: 3'- -GUCGUGCGAC---------UAGCaa-CAGuCGCGUG- -5' |
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6388 | 5' | -53.9 | NC_001847.1 | + | 97009 | 0.67 | 0.912639 |
Target: 5'- uCGGCgGCGCUGGccgCGggGggCAGCGCGu -3' miRNA: 3'- -GUCG-UGCGACUa--GCaaCa-GUCGCGUg -5' |
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6388 | 5' | -53.9 | NC_001847.1 | + | 97445 | 0.66 | 0.929866 |
Target: 5'- gCAGCGCGCacgUGA-CGagGUCcAGCGCGu -3' miRNA: 3'- -GUCGUGCG---ACUaGCaaCAG-UCGCGUg -5' |
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6388 | 5' | -53.9 | NC_001847.1 | + | 97751 | 1.09 | 0.003661 |
Target: 5'- cCAGCACGCUGAUCGUUGUCAGCGCACc -3' miRNA: 3'- -GUCGUGCGACUAGCAACAGUCGCGUG- -5' |
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6388 | 5' | -53.9 | NC_001847.1 | + | 98549 | 0.69 | 0.822055 |
Target: 5'- uGGCACGCUGGUCuucuagcgcUGUUA-CGCACg -3' miRNA: 3'- gUCGUGCGACUAGca-------ACAGUcGCGUG- -5' |
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6388 | 5' | -53.9 | NC_001847.1 | + | 98724 | 0.71 | 0.695118 |
Target: 5'- aCGGCGCGC--GUCGcaggGUCuGCGCGCg -3' miRNA: 3'- -GUCGUGCGacUAGCaa--CAGuCGCGUG- -5' |
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6388 | 5' | -53.9 | NC_001847.1 | + | 99464 | 0.67 | 0.886144 |
Target: 5'- gCAGCGCGCcGcUCGggGccaagaUCAGCGCGa -3' miRNA: 3'- -GUCGUGCGaCuAGCaaC------AGUCGCGUg -5' |
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6388 | 5' | -53.9 | NC_001847.1 | + | 99692 | 0.67 | 0.890369 |
Target: 5'- gCGGCGCGCgGcgCGggccgccguaaaGUCAGCGCGa -3' miRNA: 3'- -GUCGUGCGaCuaGCaa----------CAGUCGCGUg -5' |
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6388 | 5' | -53.9 | NC_001847.1 | + | 100501 | 0.72 | 0.642546 |
Target: 5'- uCGGCGCGCcGcUCGgccUCGGCGCGCa -3' miRNA: 3'- -GUCGUGCGaCuAGCaacAGUCGCGUG- -5' |
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6388 | 5' | -53.9 | NC_001847.1 | + | 101176 | 0.68 | 0.855825 |
Target: 5'- cCAGCGCGCc---CGgcGcCAGCGCGCu -3' miRNA: 3'- -GUCGUGCGacuaGCaaCaGUCGCGUG- -5' |
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6388 | 5' | -53.9 | NC_001847.1 | + | 101551 | 0.68 | 0.871443 |
Target: 5'- cCAGCugGCgcagGA-CGUcGUCGGCaccGCGCa -3' miRNA: 3'- -GUCGugCGa---CUaGCAaCAGUCG---CGUG- -5' |
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6388 | 5' | -53.9 | NC_001847.1 | + | 103760 | 0.68 | 0.871443 |
Target: 5'- -cGCGCGCUGGgacUUGggUGcUCAGgGCGCg -3' miRNA: 3'- guCGUGCGACU---AGCa-AC-AGUCgCGUG- -5' |
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6388 | 5' | -53.9 | NC_001847.1 | + | 104402 | 0.71 | 0.695118 |
Target: 5'- cCAGCGCGCcGcUCGg-GcCAGCGCGCg -3' miRNA: 3'- -GUCGUGCGaCuAGCaaCaGUCGCGUG- -5' |
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6388 | 5' | -53.9 | NC_001847.1 | + | 104889 | 0.67 | 0.899887 |
Target: 5'- gCGGCGCGCUGcaaCGccGcCAGCGaCACg -3' miRNA: 3'- -GUCGUGCGACua-GCaaCaGUCGC-GUG- -5' |
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6388 | 5' | -53.9 | NC_001847.1 | + | 104932 | 0.69 | 0.830795 |
Target: 5'- gGGCGCGCg---CGgcuUCGGCGCGCg -3' miRNA: 3'- gUCGUGCGacuaGCaacAGUCGCGUG- -5' |
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6388 | 5' | -53.9 | NC_001847.1 | + | 106616 | 0.66 | 0.944799 |
Target: 5'- -cGCACGCggccGggCGgcGgCGGCGCGCu -3' miRNA: 3'- guCGUGCGa---CuaGCaaCaGUCGCGUG- -5' |
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6388 | 5' | -53.9 | NC_001847.1 | + | 107142 | 0.69 | 0.830795 |
Target: 5'- gCGGCACGCcGcgCGcUG-CAGCGCGg -3' miRNA: 3'- -GUCGUGCGaCuaGCaACaGUCGCGUg -5' |
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6388 | 5' | -53.9 | NC_001847.1 | + | 113326 | 0.69 | 0.804031 |
Target: 5'- gCGGCugGUgcaaGUCGgugUGgCAGCGCACg -3' miRNA: 3'- -GUCGugCGac--UAGCa--ACaGUCGCGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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