Results 101 - 109 of 109 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
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R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 6388 | 5' | -53.9 | NC_001847.1 | + | 113932 | 0.66 | 0.944799 |
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Target: 5'- gCAGCGCGC-GGUCGcgG-CGGCGUc- -3' miRNA: 3'- -GUCGUGCGaCUAGCaaCaGUCGCGug -5' |
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| 6388 | 5' | -53.9 | NC_001847.1 | + | 116292 | 0.69 | 0.839342 |
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Target: 5'- gCAGCGugcccCGCUGAccCGUg--CGGCGCGCg -3' miRNA: 3'- -GUCGU-----GCGACUa-GCAacaGUCGCGUG- -5' |
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| 6388 | 5' | -53.9 | NC_001847.1 | + | 116660 | 0.7 | 0.756229 |
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Target: 5'- gGGCACGCUGGUggccugCGUguggGUCcGGCGCuGCg -3' miRNA: 3'- gUCGUGCGACUA------GCAa---CAG-UCGCG-UG- -5' |
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| 6388 | 5' | -53.9 | NC_001847.1 | + | 122110 | 0.66 | 0.940075 |
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Target: 5'- gCAGUugGCGCUGAcgcugcaggUCGcgacgGcCGGCGCGCa -3' miRNA: 3'- -GUCG--UGCGACU---------AGCaa---CaGUCGCGUG- -5' |
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| 6388 | 5' | -53.9 | NC_001847.1 | + | 122349 | 0.8 | 0.251933 |
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Target: 5'- --aCGCGCUGAUCGUUGggCGGCGUGCg -3' miRNA: 3'- gucGUGCGACUAGCAACa-GUCGCGUG- -5' |
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| 6388 | 5' | -53.9 | NC_001847.1 | + | 124937 | 0.66 | 0.929866 |
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Target: 5'- gGGCGCGCccUGGgcccggCGgcGgcggCGGCGCGCa -3' miRNA: 3'- gUCGUGCG--ACUa-----GCaaCa---GUCGCGUG- -5' |
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| 6388 | 5' | -53.9 | NC_001847.1 | + | 132152 | 0.66 | 0.924379 |
|
Target: 5'- gAGCGCGCg---CGgcucCAGCGCGCg -3' miRNA: 3'- gUCGUGCGacuaGCaacaGUCGCGUG- -5' |
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| 6388 | 5' | -53.9 | NC_001847.1 | + | 133323 | 0.69 | 0.839342 |
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Target: 5'- gGGCGCGCcgGA-CGUgagcgcgcUCGGCGCGCa -3' miRNA: 3'- gUCGUGCGa-CUaGCAac------AGUCGCGUG- -5' |
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| 6388 | 5' | -53.9 | NC_001847.1 | + | 133553 | 0.67 | 0.893138 |
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Target: 5'- -cGCGCGCUGGccCGag--CGGCGCGCu -3' miRNA: 3'- guCGUGCGACUa-GCaacaGUCGCGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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