miRNA display CGI


Results 21 - 40 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6388 5' -53.9 NC_001847.1 + 99464 0.67 0.886144
Target:  5'- gCAGCGCGCcGcUCGggGccaagaUCAGCGCGa -3'
miRNA:   3'- -GUCGUGCGaCuAGCaaC------AGUCGCGUg -5'
6388 5' -53.9 NC_001847.1 + 98724 0.71 0.695118
Target:  5'- aCGGCGCGC--GUCGcaggGUCuGCGCGCg -3'
miRNA:   3'- -GUCGUGCGacUAGCaa--CAGuCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 98549 0.69 0.822055
Target:  5'- uGGCACGCUGGUCuucuagcgcUGUUA-CGCACg -3'
miRNA:   3'- gUCGUGCGACUAGca-------ACAGUcGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 97751 1.09 0.003661
Target:  5'- cCAGCACGCUGAUCGUUGUCAGCGCACc -3'
miRNA:   3'- -GUCGUGCGACUAGCAACAGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 97445 0.66 0.929866
Target:  5'- gCAGCGCGCacgUGA-CGagGUCcAGCGCGu -3'
miRNA:   3'- -GUCGUGCG---ACUaGCaaCAG-UCGCGUg -5'
6388 5' -53.9 NC_001847.1 + 97009 0.67 0.912639
Target:  5'- uCGGCgGCGCUGGccgCGggGggCAGCGCGu -3'
miRNA:   3'- -GUCG-UGCGACUa--GCaaCa-GUCGCGUg -5'
6388 5' -53.9 NC_001847.1 + 94603 0.71 0.736218
Target:  5'- gCGGCGCGCUGccgcagcacGUCGcgcGUC-GCGCGCa -3'
miRNA:   3'- -GUCGUGCGAC---------UAGCaa-CAGuCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 94358 0.66 0.940075
Target:  5'- gAGgACGCUGGcgcggCGgcGUCugccGCGCGCa -3'
miRNA:   3'- gUCgUGCGACUa----GCaaCAGu---CGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 92712 0.69 0.798491
Target:  5'- gAGCGCGCgccAUCGccgccaccggcgccgUcGUCAGCGCGCg -3'
miRNA:   3'- gUCGUGCGac-UAGC---------------AaCAGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 90227 0.67 0.912639
Target:  5'- aCAGCACGCg---CGc-GUC-GCGCACg -3'
miRNA:   3'- -GUCGUGCGacuaGCaaCAGuCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 86432 0.66 0.918636
Target:  5'- uGGCgGCGCUGcgCGgcGcgggCAGCGUGCa -3'
miRNA:   3'- gUCG-UGCGACuaGCaaCa---GUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 85983 0.68 0.871443
Target:  5'- cCGGCGCG-UGAcCGUgGUCcGCGCGCc -3'
miRNA:   3'- -GUCGUGCgACUaGCAaCAGuCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 82829 0.67 0.912639
Target:  5'- aCGGCGCGacccGGUCGUUugccgcgCGGCGUACg -3'
miRNA:   3'- -GUCGUGCga--CUAGCAAca-----GUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 81864 0.66 0.944799
Target:  5'- gAGCGCGCguucGUCGgacUCGGcCGCGCg -3'
miRNA:   3'- gUCGUGCGac--UAGCaacAGUC-GCGUG- -5'
6388 5' -53.9 NC_001847.1 + 80509 0.69 0.794765
Target:  5'- gAGC-CGCUcGGcauagCGcUGUCGGCGCACg -3'
miRNA:   3'- gUCGuGCGA-CUa----GCaACAGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 80149 0.67 0.886144
Target:  5'- cCAGCgccgccaugACGCUGugguacgCGUUG-CAGUGCGCc -3'
miRNA:   3'- -GUCG---------UGCGACua-----GCAACaGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 77851 0.69 0.830795
Target:  5'- cCAGCGCGCUGGgggcgcucUCGgcccgggaguuuUUGaaCAGCGCGCu -3'
miRNA:   3'- -GUCGUGCGACU--------AGC------------AACa-GUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 77713 0.7 0.775771
Target:  5'- -cGCGCGCUGGUgCGcgcUUGGCGCGCg -3'
miRNA:   3'- guCGUGCGACUA-GCaacAGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 77617 0.7 0.756229
Target:  5'- gCGGCGcCGCUGggCGagGaCGGCGCGCc -3'
miRNA:   3'- -GUCGU-GCGACuaGCaaCaGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 77285 0.66 0.944799
Target:  5'- gAGCGCGCgcguggUGAUCGg-GUaCAGCGCc- -3'
miRNA:   3'- gUCGUGCG------ACUAGCaaCA-GUCGCGug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.