miRNA display CGI


Results 61 - 80 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6388 5' -53.9 NC_001847.1 + 53295 0.68 0.878911
Target:  5'- -cGCGCGCUcGAUCGccGcCAGUGCGg -3'
miRNA:   3'- guCGUGCGA-CUAGCaaCaGUCGCGUg -5'
6388 5' -53.9 NC_001847.1 + 53267 0.66 0.935098
Target:  5'- gCGGgGCGCUGcgCGccca-GGCGCGCg -3'
miRNA:   3'- -GUCgUGCGACuaGCaacagUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 50047 0.66 0.935098
Target:  5'- gGGCGCGgUGG-CGgccgcggGUCcGCGCGCg -3'
miRNA:   3'- gUCGUGCgACUaGCaa-----CAGuCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 47855 0.66 0.944799
Target:  5'- uCGGC-CGCggccgCGggccGUCGGCGCGCa -3'
miRNA:   3'- -GUCGuGCGacua-GCaa--CAGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 47688 0.67 0.893138
Target:  5'- gGGCGCGCgccgcggGGcCGUUG--AGCGCGCg -3'
miRNA:   3'- gUCGUGCGa------CUaGCAACagUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 46684 0.66 0.935098
Target:  5'- gCAGCACGCgcgcgcGGUCGggGcccgCGGCcCACg -3'
miRNA:   3'- -GUCGUGCGa-----CUAGCaaCa---GUCGcGUG- -5'
6388 5' -53.9 NC_001847.1 + 46502 0.71 0.705503
Target:  5'- aCAGCACGCUGAgcaGgc-UCucGCGCACg -3'
miRNA:   3'- -GUCGUGCGACUag-CaacAGu-CGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 46193 0.67 0.893138
Target:  5'- gGGCGCGgaGAggUCGgcgUGUCcgucGCGCAUg -3'
miRNA:   3'- gUCGUGCgaCU--AGCa--ACAGu---CGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 46095 0.66 0.924379
Target:  5'- cCGGCGCGCcaUGccGUCGcc--CAGCGCGCa -3'
miRNA:   3'- -GUCGUGCG--AC--UAGCaacaGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 45189 0.7 0.785342
Target:  5'- -cGCGCGCUGGcagUCGUcucgCAGCGCGa -3'
miRNA:   3'- guCGUGCGACU---AGCAaca-GUCGCGUg -5'
6388 5' -53.9 NC_001847.1 + 43717 0.68 0.855825
Target:  5'- -cGCGCGCUGcgCGcggacgUGgUGGCGCACu -3'
miRNA:   3'- guCGUGCGACuaGCa-----ACaGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 41274 0.68 0.863745
Target:  5'- cCGGCGCGC-GGUCag---CAGCGCGCc -3'
miRNA:   3'- -GUCGUGCGaCUAGcaacaGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 37926 0.67 0.906388
Target:  5'- aCGGCGCaGCUGGagcaGcUGUCGGCGCu- -3'
miRNA:   3'- -GUCGUG-CGACUag--CaACAGUCGCGug -5'
6388 5' -53.9 NC_001847.1 + 37682 0.68 0.878911
Target:  5'- uUAGCGCGCggcccugGcgCGgcugCGGCGCGCg -3'
miRNA:   3'- -GUCGUGCGa------CuaGCaacaGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 36389 0.67 0.893138
Target:  5'- gCAGCGCGCgccgCGgcGaCGGUGCACu -3'
miRNA:   3'- -GUCGUGCGacuaGCaaCaGUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 35667 0.69 0.813131
Target:  5'- gCGGauCGCGCUGAUC-UUGgccccgagCGGCGCGCu -3'
miRNA:   3'- -GUC--GUGCGACUAGcAACa-------GUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 35623 0.71 0.684677
Target:  5'- aAGCGCGCgGcgCGggGcUCGGCGCAa -3'
miRNA:   3'- gUCGUGCGaCuaGCaaC-AGUCGCGUg -5'
6388 5' -53.9 NC_001847.1 + 35496 0.66 0.929866
Target:  5'- gCGGCGCGCg---CGgaGgccaCGGCGCGCg -3'
miRNA:   3'- -GUCGUGCGacuaGCaaCa---GUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 34766 0.66 0.940075
Target:  5'- uGGCGCgGCUGcgCGccgcGgccgCGGCGCGCg -3'
miRNA:   3'- gUCGUG-CGACuaGCaa--Ca---GUCGCGUG- -5'
6388 5' -53.9 NC_001847.1 + 34155 0.66 0.935098
Target:  5'- gAGCGCGCUGcgCGagG-CGGCugagGCGCu -3'
miRNA:   3'- gUCGUGCGACuaGCaaCaGUCG----CGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.